Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq297 109 1e-18 >seq297 Length=420882 Score = 109 bits (120), Expect = 1e-18 Identities = 99/122 (81%), Gaps = 2/122 (2%) Strand=Plus/Plus Query 42711 GCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTC 42770 |||||| | || ||||||||||||||||| ||||| | || ||||||||||||||||| Sbjct 395240 GCCTTTGCTGCTGTCGAGGGCATCTTCTTTTCGGGGTCGTTTGCCTCCATCTTCTGGCTG 395299 Query 42771 AAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGA 42829 ||| || ||| || |||||||| ||||| ||||| || || ||||| ||| | ||||| Sbjct 395300 AAGAAGCGTGGTCTC-ATGCCCGGCCTCACATTCTCCAATGAGCTCATTAGCCGTGACGA 395358 Query 42830 GG 42831 || Sbjct 395359 GG 395360 Score = 105 bits (116), Expect = 1e-17 Identities = 140/194 (72%), Gaps = 3/194 (2%) Strand=Plus/Plus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||| ||||| | |||||||| |||||| ||||| ||||||| ||||||||| Sbjct 396473 AGGGTCTGCACTGCGACTTTGCATGCCTCATGTTCC---GCCACCTGGTGCACAAGCCTG 396529 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 | ||| ||| || | | ||| | | ||| |||||| || ||| ||||||| || | Sbjct 396530 AGGAGGCGCGTGTACAGCAGATCGTGATGGATGCCGTGATCATTGAGCAGGAGTTTCTGA 396589 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCC 43008 || | |||||||||| ||| ||||||||||| ||||||||| |||||||| Sbjct 396590 CGGATGCGCTGCCCGTCAACCTTATCGGCATGAACTGTGACCTCATGAAGCAGTACATCG 396649 Query 43009 AGTACGTCGCCGAC 43022 ||| || |||||| Sbjct 396650 AGTTTGTGGCCGAC 396663 Score = 84.2 bits (92), Expect = 4e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 43070 CCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCG 43129 |||||||||||| ||||| || || ||| ||||||| ||||||||||| ||||||||| Sbjct 398015 CCCCTTCGACTTCATGGAAAATATTTCGCTGGAGGGGAAGACCAACTTCTTCGAGAAGAA 398074 Query 43130 CGTCGCCGACTACCAG 43145 || ||||| |||||| Sbjct 398075 AGTGGCCGAGTACCAG 398090 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944044034978800