Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq10225 95.1 1e-14 seq8930 84.2 2e-11 seq1243 84.2 2e-11 seq16 84.2 2e-11 >seq10225 Length=9847 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||||||| |||||||| || || ||||||||| |||||||| ||||| Sbjct 9131 CCTCCCCTCAGCCGCAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCG 9190 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| |||||||| || || ||||| |||||||| ||| || Sbjct 9191 AGGGTCCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAGGG 9250 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 9251 ATGCCCTCCTTGTCC 9265 Score = 89.7 bits (98), Expect = 4e-13 Identities = 102/136 (75%), Gaps = 1/136 (1%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||||||||| ||||| || || || ||||||||| |||||||| || || Sbjct 9359 CCTCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 9418 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATAT-CAGGCGCTGCTGATCCACCGG 34019 | || | || ||||| ||||||||||| || || ||| |||||||| ||| || Sbjct 9419 AGGGTCCGGCCATCTTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGAGG 9478 Query 34020 CACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 9479 GATGCCCTCCTTGTCC 9494 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 || || ||||||||||| ||||| || || || ||||||||| |||||||| || || Sbjct 8903 CCGCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 8962 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || | || |||| ||||||||||| || ||||| |||||||| ||| || Sbjct 8963 AGGGTCCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGG 9022 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 9023 ATGCCCTCCTTGTCC 9037 >seq8930 Length=22886 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 9177 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCGATCAAAGGAAC 9118 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 9117 CATAACTGATTTAATGAGCCATTCG 9093 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Minus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 9177 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCGATCAAAGGAAC 9118 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 9117 CATAACTGATTTAATGAGCCATTCG 9093 >seq1243 Length=256296 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA-GTAAGATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 58319 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGCGCGATCAAAGGAAC 58378 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 58379 CATAACTGATTTAATGAGCCATTCG 58403 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGA-GTAAGATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 58319 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGCGCGATCAAAGGAAC 58378 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 58379 CATAACTGATTTAATGAGCCATTCG 58403 >seq16 Length=1685948 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 801651 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCGATCAAAGGAAC 801710 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 801711 CATAACTGATTTAATGAGCCATTCG 801735 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 801651 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCGATCAAAGGAAC 801710 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 801711 CATAACTGATTTAATGAGCCATTCG 801735 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 114334 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 114390 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 1266827 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCGATCAAAGGAAC 1266886 Query 114391 CAAAACTGATATATTGAGCCATTCG 114415 || ||||||| || ||||||||||| Sbjct 1266887 CATAACTGATTTAATGAGCCATTCG 1266911 Score = 84.2 bits (92), Expect = 2e-11 Identities = 72/85 (85%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 115531 CATGTATT-GCTCTAGAATTACCAC-GTTATCCAAGTAACTGAGTAA-GATCTAAGGAAC 115587 |||||||| |||||||||||||||| |||||||||| ||| | | |||| ||||||| Sbjct 1266827 CATGTATTAGCTCTAGAATTACCACAGTTATCCAAGCAACGGTCGAGCGATCAAAGGAAC 1266886 Query 115588 CAAAACTGATATATTGAGCCATTCG 115612 || ||||||| || ||||||||||| Sbjct 1266887 CATAACTGATTTAATGAGCCATTCG 1266911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396941395854010