Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq339 86.0 4e-12 >seq339 Length=724323 Score = 86.0 bits (94), Expect = 4e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || ||||| || |||||||| ||| || | | | ||||| || || Sbjct 491950 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGC 491891 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 ||||| ||| | |||| ||||| |||||| ||||| ||||||||||| || ||| Sbjct 491890 TTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTT 491831 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || ||| | || || || || || || || || | ||| ||||| || || || Sbjct 491830 GC-CTTGACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGT 491772 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || || || || ||||| Sbjct 491771 CAGGGTCTTCACGAAGATCTGCAT 491748 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || ||||| || |||||||| ||| || | | | ||||| || || Sbjct 491266 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGC 491207 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 ||||| ||| | |||| ||||| |||||| ||||| ||||||||||| || ||| Sbjct 491206 TTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTT 491147 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || || | || || || || || || || || | || ||||| || || || Sbjct 491146 GC-CTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCGAGAGTGATGGTCTTGCCCGT 491088 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || || || |||||||| Sbjct 491087 CAGGGTCTTCACGAAGATTTGCAT 491064 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || ||||| || |||||||| ||| || | | | ||||| || || Sbjct 491722 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGC 491663 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 ||||| ||| | |||| ||||| |||||| ||||| ||||||||||| || ||| Sbjct 491662 TTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTT 491603 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || || | || || || || || || || || | ||| ||||| || || || Sbjct 491602 GC-CTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGT 491544 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || || || || ||||| Sbjct 491543 CAGGGTCTTCACGAAGATCTGCAT 491520 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 14974 TGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCTAATTGT 15033 || ||||| || ||||| || |||||||| ||| || | | | ||||| || || Sbjct 492178 TGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGC 492119 Query 15034 TTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAAAT-TTT 15092 ||||| ||| | |||| ||||| |||||| ||||| ||||||||||| || ||| Sbjct 492118 TTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTT 492059 Query 15093 GCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTACCTGT 15152 || || || | || || || || || || || || | ||| ||||| || || || Sbjct 492058 GC-CTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGT 492000 Query 15153 CAGAGTTTTTACAAAAATTTGCAT 15176 ||| || || || || || ||||| Sbjct 491999 CAGGGTCTTCACGAAGATCTGCAT 491976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357283085346425