Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq10225 111 1e-19 >seq10225 Length=9847 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| ||| | | || || | Sbjct 8915 CGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCA 8974 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| |||||||| || ||||| |||||||||||| Sbjct 8975 TCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 9034 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 9035 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATG 9094 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || ||||| ||||| || || ||||| ||||||||| || Sbjct 9095 GTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATGCCT 9133 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| ||| | || ||||| || || || ||||| || | | || || | Sbjct 9143 CGCAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTCCGGCCA 9202 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| |||||||| || ||||| |||||||||||| Sbjct 9203 TCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTG 9262 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 9263 TCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATG 9322 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || ||||| ||||| || || ||||| ||||||||| || Sbjct 9323 GTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATGCCT 9361 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/217 (70%), Gaps = 1/217 (0%) Strand=Plus/Plus Query 126899 CGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAA 126958 |||| |||| || | || ||||| || || || ||||| ||| | | || || | Sbjct 9371 CGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCA 9430 Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATC-GCTGCTGATCGGGAGGTATGCCCTCCTT 127017 || || | ||| || || ||| ||||| | | ||||||| || ||||| ||||||||||| Sbjct 9431 TCTTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTT 9490 Query 127018 GTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCAC 127077 |||| ||| || ||||| | || | |||||| | ||| || || | ||| | Sbjct 9491 GTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGAT 9550 Query 127078 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| ||||| || || || || ||||||||| Sbjct 9551 GGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 9587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475352176281200