Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq339 96.9 3e-15 seq10225 95.1 1e-14 >seq339 Length=724323 Score = 96.9 bits (106), Expect = 3e-15 Identities = 164/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || || || || || || ||||| || ||||| || || ||| Sbjct 491293 ATGCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 491234 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| ||||| || || || ||| | |||| ||| |||||||| | Sbjct 491233 --GACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGG 491176 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||||||||| || || || || ||| |||| || | || | |||||| | | Sbjct 491175 GAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGA-CGTTCTCGATGGTGTCACTTGGC 491117 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||||||| | || ||||| || || || || || || |||||||| Sbjct 491116 TCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 491064 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/233 (70%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || || || || || || ||||| || ||||| || || ||| Sbjct 491521 ATGCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 491462 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| ||||| || || || ||| | |||| ||| |||||||| | Sbjct 491461 --GACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGG 491404 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||||||||| || || || || ||| |||| || | || | |||||| | | Sbjct 491403 GAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGA-CGTTCTCGATGGTGTCACTTGGC 491345 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || |||||||| | || ||||| || || || || || || || ||||| Sbjct 491344 TCAACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491292 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || || || || || || ||||| || ||||| || || ||| Sbjct 491749 ATGCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 491690 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| ||||| || || || ||| | |||| ||| |||||||| | Sbjct 491689 --GACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGG 491632 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||||||||| || || || || ||| |||| || | || | |||||| | | Sbjct 491631 GAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGA-CGTTCTCGATGGTGTCACTTGGC 491573 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || | || ||||| || || || || || || || ||||| Sbjct 491572 TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491520 Score = 84.2 bits (92), Expect = 2e-11 Identities = 161/233 (69%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | || || || || || || ||||| || ||||| || || ||| Sbjct 492205 ATGCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCG 492146 Query 45171 CTGACGGTTTTAGA--ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCG 45228 ||| | | | ||| ||||| || || || ||| | |||| ||| |||||||| | Sbjct 492145 --GACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGG 492088 Query 45229 GCGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGAC 45287 | ||||||||||| || || || || ||| |||| || | || | |||||| | | Sbjct 492087 GAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGA-CGTTCTCGATGGTGTCACTTGGC 492029 Query 45288 TCGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || | || ||||| || || || || || || || ||||| Sbjct 492028 TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491976 >seq10225 Length=9847 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||| || || |||||||| || || ||||| ||||| || || || Sbjct 9128 ATGCCTCCCCTCAGCCGCAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCT 9187 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| |||| || || || ||| | |||| || ||||||||||| Sbjct 9188 GCGAGGGTCCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGA 9247 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || |||| || | || | ||||||||| | ||| Sbjct 9248 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCGGAGGCCTC 9306 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || | || ||||| || || || || ||||| || ||||| Sbjct 9307 CACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 9357 Score = 91.5 bits (100), Expect = 1e-13 Identities = 153/219 (70%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 |||| || || || ||||| || || ||||| ||||| || || ||| || ||| Sbjct 8912 AGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGG 8971 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| |||| || || || ||| | |||| || ||||||||||| || ||||| || Sbjct 8972 CCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCC 9031 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 || || || || || |||| || | || | ||||||||| | ||| || || || || Sbjct 9032 TTGTCCTGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGT 9090 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || ||||| || || || || ||||| || ||||| Sbjct 9091 GATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 9129 Score = 87.8 bits (96), Expect = 2e-12 Identities = 161/232 (69%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || ||||| | |||| || || || ||||| || || ||||| ||||| || || ||| Sbjct 9356 ATGCCTCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCG 9415 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATC-GTTGCTGGTCCGG 45229 || ||| ||| ||||| || || || ||| | ||| | | | ||||||||||| Sbjct 9416 GCGAGGGTCCGGCCATCTTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGG 9475 Query 45230 CGGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACT 45288 || ||||| || || || || || || |||| || | || | ||||||||| | || Sbjct 9476 AGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGA-CGTTCTCAATGGTGTCGGAGGCCT 9534 Query 45289 CGACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || | || ||||| || || || || || || || ||||| Sbjct 9535 CCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 9586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451861920749800