Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq10225 158 3e-33 seq339 150 4e-31 >seq10225 Length=9847 Score = 158 bits (174), Expect = 3e-33 Identities = 161/210 (77%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| |||||||||||||| |||| ||||||||| || | |||| ||||| Sbjct 8917 CAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCATC 8976 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| ||||||||||| || ||||||||||||||| || || || || Sbjct 8977 TTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTC 9036 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| || | |||||| | | || || |||| ||||| || Sbjct 9037 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGT 9096 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || || ||||| || || Sbjct 9097 CTTGCCCGTCAGCGTCTTGACAAAGATCTG 9126 Score = 149 bits (164), Expect = 1e-30 Identities = 159/210 (76%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| || || |||||||||||||| |||| ||||||||| || | |||| ||||| Sbjct 9145 CAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTCCGGCCATC 9204 Query 199477 TTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTC 199536 |||||||||||| || |||||||| || ||||||||||||||| || || || || Sbjct 9205 TTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTC 9264 Query 199537 CTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGT 199596 ||| ||||| ||| ||| || | |||||| | | || || |||| ||||| || Sbjct 9265 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGT 9324 Query 199597 CTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||| ||||| || || || ||||| || || Sbjct 9325 CTTGCCCGTCAGCGTCTTGACAAAGATCTG 9354 Score = 147 bits (162), Expect = 5e-30 Identities = 160/211 (76%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 199417 CAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATC 199476 |||||| ||||| |||||||||||||| |||| ||||||||| || | |||| ||||| Sbjct 9373 CAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCATC 9432 Query 199477 TTCCAGCTGCTTTCCGGCGAAGAT-GAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCT 199535 ||||| |||||| ||||||||||| || ||||||||||||||| || || || | Sbjct 9433 TTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGT 9492 Query 199536 CCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCG 199595 |||| ||||| ||| ||| || | |||||| | | || || |||| ||||| | Sbjct 9493 CCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGG 9552 Query 199596 TCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||| ||||| || || ||||| || || || Sbjct 9553 TCTTGCCCGTCAGCGTCTTCACGAAGATCTG 9583 Score = 91.5 bits (100), Expect = 3e-13 Identities = 68/80 (85%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 200938 ATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAA 200997 ||||||||||| ||||||||||||||||| |||| | ||||| |||||| ||||||| Sbjct 9456 ATCTTCGCCGGCAAGCAGTTGGAAGATGGCCGGACCCTCGCCGACTACAACATCCAGAAG 9397 Query 200998 GAGTCTACTCTTCACCTTGT 201017 ||||| ||||| ||||| || Sbjct 9396 GAGTCGACTCTGCACCTGGT 9377 Score = 87.8 bits (96), Expect = 4e-12 Identities = 69/83 (83%), Gaps = 0/83 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || ||||||||||| |||||| |||||||||| |||| | ||||| |||||| ||||| Sbjct 9003 CTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCCGACTACAACATCCAG 8944 Query 200995 AAAGAGTCTACTCTTCACCTTGT 201017 || ||||| ||||| ||||| || Sbjct 8943 AAGGAGTCGACTCTGCACCTGGT 8921 >seq339 Length=724323 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| || || || || |||| ||||||||| | || || Sbjct 491284 CGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTG 491225 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || |||||||| || ||||||||||| ||| ||| ||| Sbjct 491224 CGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCT 491165 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||| ||| |||| |||||| ||| || || || | Sbjct 491164 TCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCGAGA 491105 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || ||||| || ||||| Sbjct 491104 GTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATTTG 491067 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| || || || || |||| ||||||||| | || || Sbjct 491740 CGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTG 491681 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || |||||||| || ||||||||||| ||| ||| ||| Sbjct 491680 CGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCT 491621 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||| ||| |||| |||||| ||| || || |||| Sbjct 491620 TCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGG 491561 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || ||||| || || || Sbjct 491560 GTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTG 491523 Score = 150 bits (166), Expect = 4e-31 Identities = 164/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| || || || || |||| ||||||||| | || || Sbjct 492196 CGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTG 492137 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || |||||||| || ||||||||||| ||| ||| ||| Sbjct 492136 CGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCT 492077 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||| ||| |||| |||||| ||| || || |||| Sbjct 492076 TCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGG 492017 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || ||||| || || || Sbjct 492016 GTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTG 491979 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| || || || || |||| ||||||||| | || || Sbjct 491512 CGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTG 491453 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || |||||||| || ||||||||||| ||| ||| ||| Sbjct 491452 CGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCT 491393 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||| ||| |||| |||||| ||| || || || | Sbjct 491392 TCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCAACCTCGAGA 491333 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || ||||| || || || Sbjct 491332 GTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTG 491295 Score = 145 bits (160), Expect = 2e-29 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 || || | |||||| |||||||| || || || || |||| ||||||||| | || || Sbjct 491968 CGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTG 491909 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | |||||||||| |||||| || |||||||| || ||||||||||| ||| ||| ||| Sbjct 491908 CGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCT 491849 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| |||||| ||| || |||| |||||| ||| || || |||| Sbjct 491848 TCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGG 491789 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || ||||| || || || Sbjct 491788 GTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTG 491751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178543901150335