Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq10225 163 3e-35 seq339 136 4e-27 seq297 93.3 4e-14 >seq10225 Length=9847 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| |||||||| ||||||||| | || || |||||| || Sbjct 9129 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCC 9070 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 9069 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 9011 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||||| || | ||| ||||| |||||||| || | || |||||| ||||||||| Sbjct 9010 GCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCCGACTACAA 8951 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||| ||||| |||| ||||| |||| |||||| Sbjct 8950 CATCCAGAAGGAGTCGACTCTGCACCTGGTCCTGCGGCTGAGGGGCGGC 8902 Score = 163 bits (180), Expect = 3e-35 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || ||||| |||||||| ||||||||| | || || |||||| || Sbjct 9357 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCC 9298 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 9297 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 9239 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||||||| || | ||||||||| |||||||| || | || |||||| |||||||| Sbjct 9238 GCAGCGGCTGATCTTCGCGGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCAGACTACAA 9179 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||| ||||| |||| |||||| |||| ||||| |||| || ||| Sbjct 9178 CATCCAGAAGGAGTCGACTCTGCATCTGGTCCTGCGGCTGAGGGGAGGC 9130 Score = 152 bits (168), Expect = 5e-32 Identities = 174/230 (76%), Gaps = 3/230 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| ||||||||| | || || |||||| || Sbjct 9586 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCC 9527 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | || |||| ||||| ||||| || || | ||||| Sbjct 9526 GACACCATTGAGAACG-TCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 9468 Query 38363 ACAGCGGCTC-ATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 |||||||| || | ||| ||||| ||| |||| || | || |||||| |||||||| Sbjct 9467 GCAGCGGCTGGATCTTCGCCGGCAAGCAGTTGGAAGATGGCCGGACCCTCGCCGACTACA 9408 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||| ||||| |||| ||||| |||| ||||| |||| || ||| Sbjct 9407 ACATCCAGAAGGAGTCGACTCTGCACCTGGTCCTGCGGCTGAGGGGAGGC 9358 >seq339 Length=724323 Score = 136 bits (150), Expect = 4e-27 Identities = 162/217 (75%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || |||||||| |||||||| |||| || ||| | | Sbjct 491064 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCAAGT 491123 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||| |||| ||||| || || ||||| ||||||| Sbjct 491124 GACACCATCGAGAACG-TCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 491182 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||||||| ||| |||| || | ||||| || ||||||||| Sbjct 491183 GCAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAA 491242 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || ||| | || || || |||| |||||| Sbjct 491243 CATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGT 491279 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| |||||||| |||| || ||| | | Sbjct 491292 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 491351 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||| |||| ||||| || || ||||| ||||||| Sbjct 491352 GACACCATCGAGAACG-TCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 491410 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||||||| ||| |||| || | ||||| || ||||||||| Sbjct 491411 GCAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAA 491470 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || ||| | || || || |||| |||||| Sbjct 491471 CATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGT 491507 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| ||||||||| | || || ||| | | Sbjct 491520 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 491579 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||| |||| ||||| || || ||||| ||||||| Sbjct 491580 GACACCATCGAGAACG-TCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 491638 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||||||| ||| |||| || | ||||| || ||||||||| Sbjct 491639 GCAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAA 491698 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || ||| | || || || |||| |||||| Sbjct 491699 CATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGT 491735 Score = 132 bits (146), Expect = 5e-26 Identities = 161/217 (74%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| ||||||||| | || || ||| | | Sbjct 491976 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 492035 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | | |||| | || | ||| |||| ||||| || || ||||| ||||||| Sbjct 492036 GACACCATCGAGAACG-TCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCA 492094 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||||| || || | ||||||||| ||| |||| || | ||||| || ||||||||| Sbjct 492095 GCAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAA 492154 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| || ||| | || || || |||| |||||| Sbjct 492155 CATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGT 492191 Score = 129 bits (142), Expect = 6e-25 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || || |||||||| ||||||||| | || || ||| | | Sbjct 491748 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 491807 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | ||| |||| ||||| || || ||||| ||||||| Sbjct 491808 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 491867 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||||||||| ||| |||| || | ||||| || |||||||||| Sbjct 491868 CAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAAC 491927 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || ||| | || || || |||| |||||| Sbjct 491928 ATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGT 491963 >seq297 Length=420882 Score = 93.3 bits (102), Expect = 4e-14 Identities = 102/136 (75%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 ||||||| | | |||||| || ||| ||| || | |||||||||||| || || || | Sbjct 395360 CCTCGTCACGGCTAATGAGCTCATTGGAGAATGTGAGGCCGGGCATGAGACCACGCTTCT 395301 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | ||||| || |||| ||| || ||||||||||||| ||||||||| || || || | Sbjct 395300 TCAGCCAGAAGATGGAGGCAAACGACCCCGAAAAGAAGATGCCCTCGACAGCAGCAAAGG 395241 Query 133037 CCACCAGGCGCTCGCC 133052 ||| | ||| || || Sbjct 395240 CCAGAACGCGTTCACC 395225 Score = 91.5 bits (100), Expect = 1e-13 Identities = 147/209 (70%), Gaps = 2/209 (1%) Strand=Plus/Minus Query 132712 AGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTA 132771 || ||| | ||||||||||||||||| ||||||||||| ||| |||| || || || Sbjct 396680 AGTTCGCCAAGCAGCCTGTCGGCCACAAACTCGATGTACTGCTTCATGAGGTCACAGTTC 396621 Query 132772 AGTCCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCG 132831 | || | || || |||||||| || || ||||| ||||| ||| || || Sbjct 396620 ATGCCGATAAGGTTGACGGGCAGCGCATCCGTCAGAAACTCCTGCTCAATGATCACGGCA 396561 Query 132832 TCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGT-TGCACCAAATGCTTGAACAT 132890 || | ||||| | | || |||||| | ||| | | | ||||||| || |||||| Sbjct 396560 TCCATCACGATCTGCTGTACACGCGCCTC-CTCAGGCTTGTGCACCAGGTGGCGGAACAT 396502 Query 132891 CAAGCAAGCAAAGTCGCAATGCAAGCCCT 132919 | ||| ||||||||||| |||| |||| Sbjct 396501 GAGGCATGCAAAGTCGCAGTGCAGACCCT 396473 Score = 89.7 bits (98), Expect = 5e-13 Identities = 95/123 (77%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 133278 GACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGAT 133337 ||||||||| || ||||| |||||||||||||| || ||||| || || ||||| ||| Sbjct 394101 GACCAGATTCTCATTGACAATGCCGTCGCTGGCAGCAAAAAACGCGAGGACGTGGGAGAT 394042 Query 133338 GAAATGGCGCTCGT-TGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCA 133396 ||| || |||| | || | |||| |||||||||| || || |||||||| |||| Sbjct 394041 GAAGTGTTGCTCCTCTGGC-TTCAGCCGCTCCCAGTGCTGCTGATCTTTGGACAGATCCA 393983 Query 133397 CCT 133399 ||| Sbjct 393982 CCT 393980 Score = 82.4 bits (90), Expect = 8e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||| ||||||||||| ||||| |||||||| | ||||||||| |||||||| || Sbjct 394348 GTACGTGTCGATGAGAAGACTGTACATCTCCGAGTGGATGTTCTCCATTGCGATTTGGAA 394289 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACC 133281 ||| || ||||| || ||||| | ||||||||| || ||| ||||| ||| Sbjct 394288 GCCATAGAAGCATCGTGCCTCTGTGATCTGCACTTCCTGGCTGAAGCGCTCCACC 394234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500016464739200