Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq339 158 3e-33 seq10225 152 1e-31 >seq339 Length=724323 Score = 158 bits (174), Expect = 3e-33 Identities = 163/212 (77%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| |||| || || | |||||||| Sbjct 491272 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 491213 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct 491212 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 491153 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| |||||||||||| |||||||| |||| ||||| || || || | ||| Sbjct 491152 ATCTTTGCCTTGACGTTCTCGATGGTGTC---ACTTGGCTCCACCTCGAGAGTGATGGTC 491096 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | |||||| Sbjct 491095 TTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 491064 Score = 158 bits (174), Expect = 3e-33 Identities = 163/212 (77%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| |||| || || | |||||||| Sbjct 491728 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 491669 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct 491668 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 491609 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| |||||||||||| |||||||| |||| ||||| || ||||| | ||| Sbjct 491608 ATCTTTGCCTTGACGTTCTCGATGGTGTC---ACTTGGCTCCACCTCCAGGGTGATGGTC 491552 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 491551 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491520 Score = 158 bits (174), Expect = 3e-33 Identities = 163/212 (77%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| |||| || || | |||||||| Sbjct 492184 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 492125 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct 492124 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 492065 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| |||||||||||| |||||||| |||| ||||| || ||||| | ||| Sbjct 492064 ATCTTTGCCTTGACGTTCTCGATGGTGTC---ACTTGGCTCCACCTCCAGGGTGATGGTC 492008 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 492007 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491976 Score = 154 bits (170), Expect = 3e-32 Identities = 162/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| |||| || || | |||||||| Sbjct 491956 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 491897 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct 491896 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 491837 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| |||||| ||||| |||||||| |||| ||||| || ||||| | ||| Sbjct 491836 ATCTTTGCCTTGACATTCTCGATGGTGTC---ACTTGGCTCCACCTCCAGGGTGATGGTC 491780 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 491779 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491748 Score = 149 bits (164), Expect = 1e-30 Identities = 161/212 (76%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| || ||||| ||||| || || ||||| |||| || || | |||||||| Sbjct 491500 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 491441 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 | |||||| || |||||||| ||||| || ||||| |||||||||||||| ||||| || Sbjct 491440 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 491381 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTT---TCCACTTCAAGGGTAACCGTC 195108 || ||| |||||||||||| |||||||| |||| || || || || || | ||| Sbjct 491380 ATCTTTGCCTTGACGTTCTCGATGGTGTC---ACTTGGCTCAACCTCGAGAGTGATGGTC 491324 Query 195109 TTTCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || |||| || || ||||| | ||||| Sbjct 491323 TTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491292 >seq10225 Length=9847 Score = 152 bits (168), Expect = 1e-31 Identities = 159/209 (76%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || || ||||| ||||| || || | |||||||| Sbjct 8921 ACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCATCTTCC 8980 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| ||||| ||||| || ||||| || Sbjct 8981 AGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 9040 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||||||||| || ||||| || ||||| | ||||| Sbjct 9041 ATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTCTTG 9100 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 9101 CCCGTCAGCGTCTTGACAAAGATCTGCAT 9129 Score = 145 bits (160), Expect = 2e-29 Identities = 159/210 (76%), Gaps = 1/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || ||||| ||||| ||||| || || || ||||| ||||| || || | |||||||| Sbjct 9377 ACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCATCTTCC 9436 Query 194992 AGCTGCTTACCTGCGAAGATA-AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | |||||| || |||||||| || || || ||||| ||||| ||||| || ||||| || Sbjct 9437 AACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 9496 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||||||||||||||||||||| || ||||| || ||||| | ||||| Sbjct 9497 GATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTCTT 9556 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || ||||| | ||||| Sbjct 9557 GCCCGTCAGCGTCTTCACGAAGATCTGCAT 9586 Score = 143 bits (158), Expect = 6e-29 Identities = 157/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| ||||| || || || ||||| || || || || | |||||||| Sbjct 9149 ACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTCCGGCCATCTTCC 9208 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| ||||| ||||| || ||||| || Sbjct 9209 AGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 9268 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||||||||||||||| || ||||| || ||||| | ||||| Sbjct 9269 ATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTCTTG 9328 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || |||| || || || || | ||||| Sbjct 9329 CCCGTCAGCGTCTTGACAAAGATCTGCAT 9357 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109126148098835