Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq19471 201 9e-46 >seq19471 Length=4031 Score = 201 bits (222), Expect = 9e-46 Identities = 372/536 (69%), Gaps = 15/536 (3%) Strand=Plus/Minus Query 368584 GATTGGTGTATTTCAAGAAGTAGGTTTTGGGGAACTCCAATTCCAGTATGGAAATCTGAT 368643 ||||||||| | || |||| ||| | ||||| | ||||| ||| | ||| ||||| Sbjct 2275 GATTGGTGTTTCTCTAGAAATAGATACTGGGGTAACCCAATCCCAATTTGGGTTTCTGAA 2216 Query 368644 GATGGTGAAGAAATTGTTTGTATAGGTTCAATTAAAGAATTGCAAGAATTATCTGGT-GT 368702 ||| ||||||||||| ||| | ||||||||||||||| | |||||||||| ||| || Sbjct 2215 GATATGGAAGAAATTGTATGTGTTGGTTCAATTAAAGAACTTTAAGAATTATCAGGTTGT 2156 Query 368703 GCAAAATATTAGTGATTTACATATTGATAAAATTGATCACATTAAAATTCCATCAAAGAA 368762 | | || || | |||| | |||| || | |||||||| |||| |||||||||||| | Sbjct 2155 GGAGAA-ATCACTGATCTCCATAGAGAAAGCATTGATCATATTACCATTCCATCAAAGCA 2097 Query 368763 AGGAAAAGGTTTATTGTCTCGAGTTGAAGGAGTTTTGGATTGCTGGTTTGAATCAGGTTC 368822 ||||||||| | | || || || ||| || ||||||||||| || |||||||| Sbjct 2096 AGGAAAAGGAGTTCTTAAGAGAATTCCAGAAGTATTCGATTGCTGGTTCGAGTCAGGTTC 2037 Query 368823 TATGCCTTATGGTCAAATACATTATCCATTT--GATAACGCAAAATACTTTGATAATGAT 368880 |||||| | | | || | |||||||||||| || | || | || || ||| Sbjct 2036 TATGCCATTCGCTTAAGTTCATTATCCATTTAGCATGTCAGAAGAAACCTT--TAA--CC 1981 Query 368881 AAAGATTATGTGGCTGATTTTGTAACAGAATCAATTGATCAAACACGTGGTTGGTTTTAT 368940 | ||||| ||| | ||| | | ||| ||||| ||||| | |||||||| ||| Sbjct 1980 AGAGATT-CCCAGCTAACTTTATTGCTGAAGGTCTTGATTAAACAAGAGGTTGGTTCTAT 1922 Query 368941 ACCCTATTAGTATTATCCACAGCTATTTTCGATAAACCGGCTTTTAAAAATGTAATAGTA 369000 ||| || | || | || || ||| | | | ||| | || || ||| | || || Sbjct 1921 ACCTTAATGGTCATCTCAACTGCTGTCATGAAGAAAGAACCATTCAAGAATTTGATTGTT 1862 Query 369001 ACTGGTATTGTTAATGCATCTGATGGTCAAAAGATGTCAAAAAGTAAGGGTAATTATTCC 369060 | ||| |||||| || || ||||| |||||||||||| ||| ||||| | Sbjct 1861 AATGGAATTGTTTTGGCTTCAGATGGATCAAAGATGTCAAAGTCAAAGAAAAATTACCCA 1802 Query 369061 GATCCTAATATTTTAATTG---ATAAATTTGGTGCTGATACTTTGAGATTATACCT 369113 ||||| ||| || |||| |||| || || |||||| ||| |||||||| || Sbjct 1801 GATCC-AATGCTT--ATTGCTCATAACTTCGGAGCTGATGCTTGCAGATTATATCT 1749 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4027973622827450