Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq10225 107 1e-18 seq339 87.8 1e-12 >seq10225 Length=9847 Score = 107 bits (118), Expect = 1e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 48538 CGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAG 48597 |||||||||| ||||||| |||| || || || ||| || || || ||||| || | Sbjct 8901 CGCCGCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 8960 Query 48598 ATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGG 48657 || | || | || |||| |||||| ||||| || ||||| ||||| || |||| | Sbjct 8961 CGAGGGTCCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAG 9020 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | || || ||||||| Sbjct 9021 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCA 9080 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || || || ||||||| || || ||||| |||||||| Sbjct 9081 CCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 9129 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| ||||||| |||| ||| || || ||| || || || ||||| || | Sbjct 9130 GCCTCCCCTCAGCCGCAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGC 9189 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGG 48658 || | || | || |||| |||||| || || || ||||| ||||| || |||| || Sbjct 9190 GAGGGTCCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAGG 9249 Query 48659 AACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCAC 48718 | |||||||||||| ||||| || || | | | || || |||||||| Sbjct 9250 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCAC 9309 Query 48719 CTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||| || || || || ||||||| || || ||||| |||||||| Sbjct 9310 CTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 9357 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 48539 GCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGA 48598 ||| ||||| ||||||| |||| || || || ||| || || || ||||| || | Sbjct 9358 GCCTCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 9417 Query 48599 TAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATAT-CAGTCGCTGTTGATCCGTGG 48657 || | || | || ||||||||||| ||||| || || ||| ||||| || |||| | Sbjct 9418 GAGGGTCCGGCCATCTTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGAG 9477 Query 48658 GAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCA 48717 | | |||||||||||| ||||| || || | | | || || ||||||| Sbjct 9478 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCA 9537 Query 48718 CCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||| || || || || ||||||| || || || || |||||||| Sbjct 9538 CCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 9586 >seq339 Length=724323 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| || || ||| ||||| || || ||||| || || || | || Sbjct 491965 AGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGG 491906 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || ||||||||||| || || || ||||||||||| || || | |||| ||| ||| Sbjct 491905 CCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCC 491846 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || | ||||||||||| || Sbjct 491845 TTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTG 491786 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || ||||||| || || || || |||||||| Sbjct 491785 ATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491748 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380821509861615