Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq19471 179 2e-39 seq668 120 2e-21 >seq19471 Length=4031 Score = 179 bits (198), Expect = 2e-39 Identities = 340/491 (69%), Gaps = 17/491 (3%) Strand=Plus/Minus Query 297112 GATTGGTGTATTTCAAGAAGTAGATATTGGGGAACACCAATTCCAATTTGGAAATCTGAT 297171 ||||||||| | || |||| |||||| ||||| | ||||| ||||||||| ||||| Sbjct 2275 GATTGGTGTTTCTCTAGAAATAGATACTGGGGTAACCCAATCCCAATTTGGGTTTCTGAA 2216 Query 297172 GATGGTGAAGAAATAATTTGTATTGGTTCACTTGAAGAATTAAAAGAATTTTCAGGAATT 297231 ||| |||||||| | ||| |||||||| || ||||| | ||||||| ||||| | Sbjct 2215 GATATGGAAGAAATTGTATGTGTTGGTTCAATTAAAGAACTTTAAGAATTATCAGGTTGT 2156 Query 297232 GATAATATTAATGATTTACATATTGATAAAATTGATCAAATAAAAATTCCTTCTCGTAAA 297291 | | || | |||| | |||| || | |||||||| || | ||||| || || Sbjct 2155 GGAGAAATCACTGATCTCCATAGAGAAAGCATTGATCATATTACCATTCCATCAAAGCAA 2096 Query 297292 GGAAAAGGCATGTTATCTCGTG--TTACCGGTGTTTTAGATTGTTGGTTTGAATCAGGTT 297349 |||||||| ||| | | | || | | || || ||||| ||||| || ||||||| Sbjct 2095 GGAAAAGGA--GTTCTTAAGAGAATTCCAGAAGTATTCGATTGCTGGTTCGAGTCAGGTT 2038 Query 297350 CTATGCCTTATGGTCAAATTCATTATCCTTTTGAAAATTCCGAAATTTTAGACACTTCAC 297409 ||||||| | | | || |||||||||| ||| | || ||| | || || || Sbjct 2037 CTATGCCATTCGCTTAAGTTCATTATCCATTTAGCATGTCAGAA----GAAACCTTTAAC 1982 Query 297410 AAGATTATATTGCAG---ATTTTATAACAGAATCAATTGATCAAACAAGAGGTTGGTTTT 297466 ||| || | ||| | ||||| | ||| ||||| |||||||||||||||| | Sbjct 1981 CAGA-GAT-TCCCAGCTAACTTTATTGCTGAAGGTCTTGATTAAACAAGAGGTTGGTTCT 1924 Query 297467 ATACTTTATTAGTTCTTTCTACAGCTATATTTAACAAACCAGCATTTAAAAATGTAATTG 297526 |||| ||| | || | || || ||| | | || ||| | |||| || ||| | |||| Sbjct 1923 ATACCTTAATGGTCATCTCAACTGCTGTCATGAAGAAAGAACCATTCAAGAATTTGATTG 1864 Query 297527 TTACAGGAATTGTTAACGCAGCTGATGGACAAAAAATGTCAAAAAGT-AAAG-GTAATTA 297584 ||| ||||||||| || | |||||| ||| ||||| ||||| |||| ||||| Sbjct 1863 TTAATGGAATTGTTTTGGCTTCAGATGGATCAAAGATGTC--AAAGTCAAAGAAAAATTA 1806 Query 297585 TCCTGATCCAA 297595 || ||||||| Sbjct 1805 CCCAGATCCAA 1795 >seq668 Length=222624 Score = 120 bits (132), Expect = 2e-21 Identities = 116/149 (78%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 474728 GTAACTGATGCAGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACT 474787 ||||| |||| || | ||||| || || ||||| || || || || || ||||| || Sbjct 190717 GTAACAAATGCTGTGGTGACTGTACCGGCCTATTTCAACGACTCACAGCGGCAAGCCACC 190658 Query 474788 AAAGATGCGGGAAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCA 474847 |||||||| || | |||||||| || ||||| | |||||||||||||| ||||||||| Sbjct 190657 AAAGATGCCGGCACCATTGCAGGGCTGAATGTGCTGCGTATTATTAATGAGCCAACAGCA 190598 Query 474848 GCCGCACTTGCTTATGGTCTTGATAAGAA 474876 || || |||| ||||| ||||| ||||| Sbjct 190597 GCAGCCATTGCCTATGGCCTTGACAAGAA 190569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3267106614225740