Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_020474.2 Length=180421 Score E Sequences producing significant alignments: (Bits) Value seq99 163 3e-35 seq7125 123 3e-23 seq15077 109 6e-19 >seq99 Length=974049 Score = 163 bits (180), Expect = 3e-35 Identities = 453/684 (66%), Gaps = 12/684 (2%) Strand=Plus/Plus Query 160308 CCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTG 160367 || || || ||||||| ||||| || || ||||||||||| |||||||||||| ||||| Sbjct 381586 CCCGGCACCCCGGGCAGGCGCTGCAGCGTCGCCCACAGGTGCTCGTCGGGGCTGAACGTG 381645 Query 160368 TCCTTAGACCATTCCATGAACTCTCCGATTAACCT---GTCCCGCAGAACGTGAGTAACG 160424 ||||| ||| ||||||| | | ||| | | ||| | ||| ||||| ||| Sbjct 381646 TCCTTCTCCCACTCCATGAGCGC-CCG--CGCCGTGGGGTCGCTCAGCACGTGCTCGACG 381702 Query 160425 TAGGATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGC 160484 ||| | ||||| || | ||||||| | |||||||| || || |||| || ||||| Sbjct 381703 AAGGCGCGCGTCACCACGATGTACGCGTTCCCGGAGAACATGGGCGTGGGGATGGGCGGA 381762 Query 160485 GTGTCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGCGTGTCGCTTCTTC 160544 | | || | || || ||| || | | ||||| | | |||| || ||| | Sbjct 381763 GGGGACTTCTTCTCGCCCGTGGAGCGCAGGCCGTCGTTCACGATCTCGTGGCGGATCTGC 381822 Query 160545 CACCTGACCATCTTG-TGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAG 160603 |||| ||| |||| || | || || | | ||| | ||||| | |||| ||| Sbjct 381823 CACCGACCCACCTTGCCGCCG-GGAGTGTGCATGGACTCCATGCTGTTCTCGCCGTTGAG 381881 Query 160604 CGATTTCAGCTGCTTG-ACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACA 160662 | |||| ||| | || ||||| ||||| || || | || ||||| ||||||| Sbjct 381882 GGCGCGCAGC-GCTCGCACCATCTCCAGGTTGGTTTTAATGGGGAAGTCCAGGCCGCACA 381940 Query 160663 AGTTTATCACGTACTTCCATTTC-GCGCTCAGGTCGTGCAGGTCCCTCATGCAATTAATA 160721 ||| || | |||||||| | ||| || | | ||||||| |||||| || | Sbjct 381941 GGTTGATGAAATACTTCCAGGGCTGCGGCGCGGCCACG-AGGTCCCGCATGCAGTTGAGG 381999 Query 160722 TCTGCCTGCACGCGGCTCCAGGAAGCGTACACTACGTTCTCTAGTTTACTGGCCACAAAG 160781 || ||||||||||| |||||| | ||| || ||| ||| | ||||||| ||| Sbjct 382000 TCGGCCTGCACGCGCAGCCAGGAGGTGTAGACCACGCGCTCCTGCCGGCTGGCCATGAAG 382059 Query 160782 ACGTTATCGAAACACGACACGATTCCCACCACCGCCAGAAAGAACATCTTATCCGCCTTT 160841 ||||| ||| |||| ||| | ||||||| | | | || ||| Sbjct 382060 ACGTTGGGGAAGCACGCGGCGAGAGCGCGCACCGCCTCTTGGTAGGGCGGCGGCGACTTC 382119 Query 160842 CGGTCCACGTGCACGCAATACAGGTTCTGAGGCGCGTAGATGGCCCTGAGCAACCTCTCG 160901 |||||||||| | ||| || | |||||| |||||||||||||| | |||| |||||| Sbjct 382120 TGGTCCACGTGGAGGCAGTAGACGTTCTGCGGCGCGTAGATGGCGCGCAGCAGCCTCTCC 382179 Query 160902 AACATCTCTATCTTATGATGGATCACGATAGAGTAGGCTATCGGAAACTCGGTCTCCTCG 160961 | ||| || | || ||| ||| | |||||||| || || || | | |||||| Sbjct 382180 AGCATGTCCACGCGGTGGTGGGCCACCACGGAGTAGGCGATGGGGAAGGCCGCCTCCTCC 382239 Query 160962 CGACTCAGGGACCCGGTCAGGTAC 160985 ||||| | | | |||| |||| Sbjct 382240 TCGCTCAGCGGCACCGTCACGTAC 382263 >seq7125 Length=30046 Score = 123 bits (136), Expect = 3e-23 Identities = 259/379 (68%), Gaps = 8/379 (2%) Strand=Plus/Plus Query 160308 CCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTG 160367 ||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || Sbjct 28103 CCGGGCACGCCGGGCATCCGCTGGAGGGTCGCCCACAGGTGCTCGTCGGGGCTGTAGGTA 28162 Query 160368 TCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAG 160427 ||| | ||| || |||| | | || || ||| | ||| ||||| ||| || Sbjct 28163 TCCCCCGCCCACTCGATGAGGGCCCGCGCTACCCGGTCACTCAGCACGTGCTCCACGAAG 28222 Query 160428 GATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTG 160487 | | ||||| || | || |||||||| | ||| || ||| |||| || ||||||| | Sbjct 28223 GCGCGCGTCACCACCACATATGCGCTGCCCGCGAACATGGGTGTGGGGATGGGCGGCGGG 28282 Query 160488 T-CTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC-GTGTCGCT--TCTT 160543 | ||| || | ||| | || | ||| || | || | | ||| ||| | Sbjct 28283 TGCTTGGTTAGGCCCGTCG--AG-CGGATCTCGTTGC-CCGCCACTTTGTAGCTGAGGGT 28338 Query 160544 CCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAG 160603 ||| | || ||||| | |||||||| | ||||| ||||||||| || | ||| Sbjct 28339 CCAGCGCGCCCTCTTGCCCCTGGGCATGCGCACTGTCTCCAGACTGTTGCGGCCATTGAG 28398 Query 160604 CGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAA 160663 | |||| | || ||||| ||||||||||||| || ||||| ||||||| Sbjct 28399 GGTGCGCAGCGCCCGCACCATCTCCAGGTTCGTCTTGATGGGGAAGTCACGGCCGCACAG 28458 Query 160664 GTTTATCACGTACTTCCAT 160682 ||| || | |||| ||||| Sbjct 28459 GTTGATGAAGTACCTCCAT 28477 >seq15077 Length=35091 Score = 109 bits (120), Expect = 6e-19 Identities = 256/379 (68%), Gaps = 8/379 (2%) Strand=Plus/Minus Query 160308 CCGGGAACGCCGGGCATACGCTGTAGGGTGGCCCACAGGTGTTCGTCGGGGCTGTACGTG 160367 ||||| ||||||||||| ||||| ||||| ||||||||||| |||||||||||||| || Sbjct 31312 CCGGGCACGCCGGGCATCCGCTGGAGGGTCGCCCACAGGTGCTCGTCGGGGCTGTAGGTA 31253 Query 160368 TCCTTAGACCATTCCATGAACTCTCCGATTAACCTGTCCCGCAGAACGTGAGTAACGTAG 160427 ||| | ||| || |||| | | | | ||| | ||| ||||| ||| || Sbjct 31252 TCCCCTGCCCACTCGATGAGAGCCCGCGCTGCCGGGTCACTCAGCACGTGCTCCACGAAG 31193 Query 160428 GATCTGGTCACGACAAAGTACGCGCTGCCGGAGAATATCGGTATGGGTATAGGCGGCGTG 160487 | | ||||| || | || |||||||| | ||| || ||| |||| || ||||||| | Sbjct 31192 GCGCGCGTCACCACCACATATGCGCTGCCCGCGAACATGGGTGTGGGGATGGGCGGCGGG 31133 Query 160488 -TCTTTGTCCTGACCGGTGTTAGACACCACTCCTTTCACCAGCGC-GTGTCGCT--TCTT 160543 ||| || | ||| | || | ||| || | || | | ||| ||| | Sbjct 31132 CGCTTGGTTAGGCCCGTCG--AG-CGGATCTCGTTGC-CCGCCACTTTGTAGCTGAGGGT 31077 Query 160544 CCACCTGACCATCTTGTGCGGTGGCATGCGTTCCGTCTCTAGACTGTTGGCACCGTCGAG 160603 ||| | || ||||| | |||||||| | ||||| ||||||||| || | ||| Sbjct 31076 CCAGCGCGCCCTCTTGCCCCTGGGCATGCGCACTGTCTCCAGACTGTTGCGGCCATTGAG 31017 Query 160604 CGATTTCAGCTGCTTGACGATCTCTAGGTTCGTCTTGAGCGGAAAGTCGGTACCGCACAA 160663 | |||| | || ||||| ||||||||||||| || ||||| ||||||| Sbjct 31016 GGTGCGCAGCGCCCGCACCATCTCCAGGTTCGTCTTGATGGGGAAGTCACGGCCGCACAG 30957 Query 160664 GTTTATCACGTACTTCCAT 160682 ||| || | |||| ||||| Sbjct 30956 GTTGATGAAGTACCTCCAT 30938 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 577038782923800