Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq339 161 1e-34 seq668 93.3 6e-14 >seq339 Length=724323 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||||||||| ||||| ||||| || || || || ||||| |||||||| ||| | Sbjct 491064 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCAAGT 491123 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| || ||||| || || |||||||||||||| ||||| ||| Sbjct 491124 GACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 491183 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || || || || || ||| | |||||||| || || || | || |||||| Sbjct 491184 CAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAAC 491243 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || || || ||||| || || | || || ||||| Sbjct 491244 ATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCTCCGTGGTGG 491290 Score = 161 bits (178), Expect = 1e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || || ||||| |||||||||||| | Sbjct 491292 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 491351 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| || ||||| || || |||||||||||||| ||||| ||| Sbjct 491352 GACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 491411 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || || || || || ||| | |||||||| || || || | || |||||| Sbjct 491412 CAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAAC 491471 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || || || ||||| || || | || || ||||| Sbjct 491472 ATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCTCCGTGGTGG 491518 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || || |||||||| ||||| ||| | Sbjct 491520 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 491579 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| || ||||| || || |||||||||||||| ||||| ||| Sbjct 491580 GACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 491639 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || || || || || ||| | |||||||| || || || | || |||||| Sbjct 491640 CAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAAC 491699 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || || || ||||| || || | || || ||||| Sbjct 491700 ATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCTCCGTGGTGG 491746 Score = 158 bits (174), Expect = 2e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || || |||||||| ||||| ||| | Sbjct 491976 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 492035 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| ||| |||| || ||||| || || |||||||||||||| ||||| ||| Sbjct 492036 GACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 492095 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || || || || || ||| | |||||||| || || || | || |||||| Sbjct 492096 CAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAAC 492155 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || || || ||||| || || | || || ||||| Sbjct 492156 ATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCTCCGTGGTGG 492202 Score = 152 bits (168), Expect = 7e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| ||||| ||||| ||||| || || || || |||||||| ||||| ||| | Sbjct 491748 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 491807 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| ||||| || |||| || ||||| || || |||||||||||||| ||||| ||| Sbjct 491808 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 491867 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || ||||| || || || || || ||| | |||||||| || || || | || |||||| Sbjct 491868 CAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAAC 491927 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGG 172088 | || || || || || || ||||| || || | || || ||||| Sbjct 491928 ATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCTCCGTGGTGG 491974 >seq668 Length=222624 Score = 93.3 bits (102), Expect = 6e-14 Identities = 114/153 (75%), Gaps = 2/153 (1%) Strand=Plus/Minus Query 195698 ACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTCACAACGACAGGCG 195757 ||||| | | |||| || ||||||||||| || || |||| || ||||| || || || Sbjct 190720 ACTGTAACAAATGCTGTGGTGACTGTACCGGCCTATTTCAACGACTCACAGCGGCAAGCC 190661 Query 195758 ACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTATCAATGAACCAAC 195816 || || || || | | ||||| || || || ||| || | ||||| ||||| ||||| Sbjct 190660 ACCAAAGATGCCGGCACCATTGCAGGGCTGAA-TGTGCTGCGTATTATTAATGAGCCAAC 190602 Query 195817 AGCGGCTGCAATTGCTTATGGTCTGGACAAGAA 195849 ||| || || ||||| ||||| || |||||||| Sbjct 190601 AGCAGCAGCCATTGCCTATGGCCTTGACAAGAA 190569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 657656776883600