Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq10225 116 3e-21 seq339 100 3e-16 >seq10225 Length=9847 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || || || || || || ||| || Sbjct 9129 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCC 9070 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 9069 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 9010 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| ||||| || |||||||| ||| | | | | | || || ||| Sbjct 9009 CAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCCGACTACAAC 8950 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCG 24932 || || ||||| ||||| || ||| |||| |||| || | || |||| Sbjct 8949 ATCCAGAAGGAGTCGACTCTGCACCTGGTCCTGCGGCTGAGGGGCGGCG 8901 Score = 114 bits (126), Expect = 1e-20 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||||||| | || ||||| || || || || || || || || || || ||| || Sbjct 9357 ATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCC 9298 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 9297 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 9238 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || |||||||| ||| | | | | |||| || ||| Sbjct 9237 CAGCGGCTGATCTTCGCGGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCAGACTACAAC 9178 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || ||||| ||||| || || |||| |||| || | |||||| Sbjct 9177 ATCCAGAAGGAGTCGACTCTGCATCTGGTCCTGCGGCTGAGGGGAGGC 9130 Score = 104 bits (114), Expect = 2e-17 Identities = 161/229 (70%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || ||||| || || || || || || || || || || ||| || Sbjct 9586 ATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCC 9527 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || ||||| || || Sbjct 9526 GACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAG 9467 Query 24824 CAAC-GTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || | | | |||||| ||||| || ||| |||| ||| | | | | | || || || Sbjct 9466 CAGCGGCTGGATCTTCGCCGGCAAGCAGTTGGAAGATGGCCGGACCCTCGCCGACTACAA 9407 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 ||| || ||||| ||||| || ||| |||| |||| || | |||||| Sbjct 9406 CATCCAGAAGGAGTCGACTCTGCACCTGGTCCTGCGGCTGAGGGGAGGC 9358 >seq339 Length=724323 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || ||||| || || | | Sbjct 491292 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 491351 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || |||||||| || Sbjct 491352 GACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 491411 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||| |||| ||| | | |||| || || ||| Sbjct 491412 CAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAAC 491471 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || ||| |||| |||| | || || ||| Sbjct 491472 ATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCTCCGTGGTGGC 491519 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | Sbjct 491520 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 491579 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || |||||||| || Sbjct 491580 GACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 491639 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||| |||| ||| | | |||| || || ||| Sbjct 491640 CAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAAC 491699 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || ||| |||| |||| | || || ||| Sbjct 491700 ATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCTCCGTGGTGGC 491747 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | Sbjct 491748 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 491807 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || |||||||| || Sbjct 491808 GACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 491867 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||| |||| ||| | | |||| || || ||| Sbjct 491868 CAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAAC 491927 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || ||| |||| |||| | || || ||| Sbjct 491928 ATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCTCCGTGGTGGC 491975 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || || || || || || || || || || || || | | Sbjct 491976 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT 492035 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||||||| ||||| ||||| || |||||||| || Sbjct 492036 GACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 492095 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || || ||||||| || || || ||| |||| ||| | | |||| || || ||| Sbjct 492096 CAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAAC 492155 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGC 24931 || || || ||||| || || ||| |||| |||| | || || ||| Sbjct 492156 ATCCAGAAAGAATCCACCCTCCACCTGGTCCTGCGTCTCCGTGGTGGC 492203 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449756978881400