Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq10225 154 1e-32 seq339 143 2e-29 >seq10225 Length=9847 Score = 154 bits (170), Expect = 1e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 || ||||||| || |||||||||||| | || ||||||||| ||||| ||||| | Sbjct 8903 CCGCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 8962 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| ||||| ||||| |||||||||||||| || |||||||| | || Sbjct 8963 AGGGTCCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGG 9022 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || |||||| | || | || |||||| || Sbjct 9023 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACC 9082 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| ||||| || ||||| ||||||||||||||| Sbjct 9083 TCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATG 9130 Score = 150 bits (166), Expect = 1e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| || ||||||||| || | || ||||||||| ||||| ||||| | Sbjct 9131 CCTCCCCTCAGCCGCAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCG 9190 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGC 34870 ||| | || |||| ||||| ||||| || ||||||||||| || |||||||| | || Sbjct 9191 AGGGTCCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAGGG 9250 Query 34871 ACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACA 34930 | ||||||||||| | || || |||||| | || | || |||||| || Sbjct 9251 ATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACC 9310 Query 34931 TCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| ||||| || ||||| ||||||||||||||| Sbjct 9311 TCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATG 9358 Score = 143 bits (158), Expect = 2e-29 Identities = 170/229 (74%), Gaps = 1/229 (0%) Strand=Plus/Plus Query 34751 CCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGAT 34810 |||||||||| || |||||||||||| | || ||||||||| ||||| ||||| | Sbjct 9359 CCTCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 9418 Query 34811 AGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGAT-CAGTCGTTGCTGGTCTTGCGG 34869 ||| | || |||| |||| ||||| ||||||||||| ||| || |||||||| | || Sbjct 9419 AGGGTCCGGCCATCTTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGAGG 9478 Query 34870 CACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGAC 34929 | ||||||||||| | || || |||||| | || | || |||||| || Sbjct 9479 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCAC 9538 Query 34930 ATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 || | ||| |||||||| ||||| || ||||| || |||||||||||| Sbjct 9539 CTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 9587 >seq339 Length=724323 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | |||| || ||||| ||||| ||||| || || |||| |||| Sbjct 491732 CAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATC 491673 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || |||||||||||||| |||||||| | || | || |||||||| Sbjct 491672 TTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTC 491613 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||| |||||| | || | ||| | | ||| || || | ||| ||||| Sbjct 491612 CTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGT 491553 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| |||||||| || |||||||||||| Sbjct 491552 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491519 Score = 143 bits (158), Expect = 2e-29 Identities = 160/214 (75%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | |||| || ||||| ||||| ||||| || || |||| |||| Sbjct 492188 CAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATC 492129 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || |||||||||||||| |||||||| | || | || |||||||| Sbjct 492128 TTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTC 492069 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||| |||||| | || | ||| | | ||| || || | ||| ||||| Sbjct 492068 CTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGT 492009 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| |||||||| || |||||||||||| Sbjct 492008 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491975 Score = 141 bits (156), Expect = 6e-29 Identities = 162/216 (75%), Gaps = 4/216 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | |||| || ||||| ||||| ||||| || || |||| |||| Sbjct 491960 CAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATC 491901 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || |||||||||||||| |||||||| | || | || |||||||| Sbjct 491900 TTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTC 491841 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || ||| ||||| || || || | ||| | | ||| || || | ||| ||| Sbjct 491840 CTGGATCTTTGCCTTGAC--ATTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATG 491783 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| ||||| |||||||| || |||||||||||| Sbjct 491782 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491747 Score = 138 bits (152), Expect = 7e-28 Identities = 160/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | |||| || ||||| ||||| ||||| || || |||| |||| Sbjct 491276 CAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATC 491217 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || |||||||||||||| |||||||| | || | || |||||||| Sbjct 491216 TTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTC 491157 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||| |||||| | || | ||| | | ||| || || | || ||||| Sbjct 491156 CTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCGAGAGTGATGGT 491097 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||| ||||| |||||||| || ||||| |||||||| Sbjct 491096 CTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGAT 491061 Score = 138 bits (152), Expect = 7e-28 Identities = 159/214 (74%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 |||||||||||| | |||| || ||||| ||||| ||||| || || |||| |||| Sbjct 491504 CAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATC 491445 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 |||| ||||| || |||||||||||||| |||||||| | || | || |||||||| Sbjct 491444 TTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTC 491385 Query 34885 GTTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGT 34944 | || ||| |||||| | || | ||| | | ||| || || | || ||||| Sbjct 491384 CTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGT 491325 Query 34945 CTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||| ||||| |||||||| || |||||||||||| Sbjct 491324 CTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325593545628095