Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq339 132 9e-26 >seq339 Length=724323 Score = 132 bits (146), Expect = 9e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | ||| || || ||||||||||| || || || || || || | | || Sbjct 491963 ACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCC 491904 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || || || ||||| |||| || || || ||||| || |||||||| Sbjct 491903 ATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTT 491844 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || |||||||| || ||||| || || || ||| | || || || |||| || || Sbjct 491843 GTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGAT 491784 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 491783 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491748 Score = 129 bits (142), Expect = 1e-24 Identities = 163/224 (73%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | ||| || || ||||||||||| || || || || || || | | || Sbjct 491279 ACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCC 491220 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || || || ||||| |||| || || || ||||| || |||||||| Sbjct 491219 ATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTT 491160 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || |||||||| || || || || || || ||| | || || || || | ||| || Sbjct 491159 GTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCGAGAGTGAT 491100 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 |||||||| |||| ||||| || || || ||||| |||| || Sbjct 491099 GGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCATGATTAAAT 491056 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | ||| || || ||||||||||| || || || || || || | | || Sbjct 491507 ACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCC 491448 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || || || ||||| |||| || || || ||||| || |||||||| Sbjct 491447 ATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTT 491388 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || |||||||| || || || || || || ||| | || || || || | ||| || Sbjct 491387 GTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGAT 491328 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 491327 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491292 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | ||| || || ||||||||||| || || || || || || | | || Sbjct 491735 ACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCC 491676 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || || || ||||| |||| || || || ||||| || |||||||| Sbjct 491675 ATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTT 491616 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || |||||||| || || || || || || ||| | || || || |||| || || Sbjct 491615 GTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGAT 491556 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 491555 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491520 Score = 129 bits (142), Expect = 1e-24 Identities = 158/216 (73%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 82595 ACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACC 82654 |||||| || | ||| || || ||||||||||| || || || || || || | | || Sbjct 492191 ACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCC 492132 Query 82655 GTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTT 82714 ||||| | || || || || ||||| |||| || || || ||||| || |||||||| Sbjct 492131 ATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTT 492072 Query 82715 ATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTAT 82774 || || |||||||| || || || || || || ||| | || || || |||| || || Sbjct 492071 GTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGAT 492012 Query 82775 CGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| |||| ||||| || || |||||||| Sbjct 492011 GGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981512645576695