Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07]
25,005 sequences; 885,534,757 total letters
Query= NC_024625.1
Length=151109
Score E
Sequences producing significant alignments: (Bits) Value
seq339 159 3e-34
seq10225 145 7e-30
>seq339
Length=724323
Score = 159 bits (176), Expect = 3e-34
Identities = 157/200 (79%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
|||||| |||||||| || ||||| ||| || |||| | | | || || | ||||||||
Sbjct 491717 GGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA-TCTTCCAACTGCTTGC 491659
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
||||| | || || ||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 491658 CCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCT 491599
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||| | ||||| | |||||||| || | ||||| ||| ||||| ||||| |
Sbjct 491598 TGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGG 491539
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || ||||| |||||||||
Sbjct 491538 TCTTCACGAAGATCTGCATG 491519
Score = 159 bits (176), Expect = 3e-34
Identities = 157/200 (79%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
|||||| |||||||| || ||||| ||| || |||| | | | || || | ||||||||
Sbjct 491945 GGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA-TCTTCCAACTGCTTGC 491887
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
||||| | || || ||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 491886 CCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCT 491827
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||| | ||||| | |||||||| || | ||||| ||| ||||| ||||| |
Sbjct 491826 TGACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGG 491767
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || ||||| |||||||||
Sbjct 491766 TCTTCACGAAGATCTGCATG 491747
Score = 159 bits (176), Expect = 3e-34
Identities = 157/200 (79%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
|||||| |||||||| || ||||| ||| || |||| | | | || || | ||||||||
Sbjct 492173 GGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA-TCTTCCAACTGCTTGC 492115
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
||||| | || || ||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 492114 CCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCT 492055
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||| | ||||| | |||||||| || | ||||| ||| ||||| ||||| |
Sbjct 492054 TGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGG 491995
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || ||||| |||||||||
Sbjct 491994 TCTTCACGAAGATCTGCATG 491975
Score = 156 bits (172), Expect = 4e-33
Identities = 156/200 (78%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
|||||| |||||||| || ||||| ||| || |||| | | | || || | ||||||||
Sbjct 491261 GGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA-TCTTCCAACTGCTTGC 491203
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
||||| | || || ||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 491202 CCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCT 491143
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||| | ||||| | |||||||| |||| |||| ||| ||||| ||||| |
Sbjct 491142 TGACGTTCTCGATGGTGTCACTTGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGG 491083
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || ||||| || ||||||
Sbjct 491082 TCTTCACGAAGATTTGCATG 491063
Score = 156 bits (172), Expect = 4e-33
Identities = 156/200 (78%), Gaps = 2/200 (1%)
Strand=Plus/Minus
Query 133463 GGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGC 133521
|||||| |||||||| || ||||| ||| || |||| | | | || || | ||||||||
Sbjct 491489 GGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA-TCTTCCAACTGCTTGC 491431
Query 133522 CCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
||||| | || || ||||||||||||||||| |||||||||||||| ||||||| ||
Sbjct 491430 CCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCT 491371
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||| | ||||| | ||||| || |||| |||| ||| ||||| ||||| |
Sbjct 491370 TGACGTTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCCGTCAGGG 491311
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || ||||| |||||||||
Sbjct 491310 TCTTCACGAAGATCTGCATG 491291
>seq10225
Length=9847
Score = 145 bits (160), Expect = 7e-30
Identities = 155/202 (77%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| ||| | | || | | | || || |||||||||||
Sbjct 8933 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCA-TCTTCCAGCTGCTTGCC 8991
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
||| | || |||||||||||||| ||||||||||| |||||||| |||||| |||
Sbjct 8992 GGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 9051
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||||| ||||||| || |||||| || | ||||| ||| ||||| ||||| ||
Sbjct 9052 GACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGT 9111
Query 133643 TTTTACGAAAATCTGCATGGCT 133664
|| || || ||||||||| ||
Sbjct 9112 CTTGACAAAGATCTGCATGCCT 9133
Score = 145 bits (160), Expect = 7e-30
Identities = 155/202 (77%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| || | | || | | | || || |||||||||||
Sbjct 9161 GTCGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTCCGGCCA-TCTTCCAGCTGCTTGCC 9219
Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582
|||| | || |||||||||||||| ||||||||||| |||||||| |||||| |||
Sbjct 9220 CGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTT 9279
Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642
|| | ||||| ||||||| || |||||| || | ||||| ||| ||||| ||||| ||
Sbjct 9280 GACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGT 9339
Query 133643 TTTTACGAAAATCTGCATGGCT 133664
|| || || ||||||||| ||
Sbjct 9340 CTTGACAAAGATCTGCATGCCT 9361
Score = 138 bits (152), Expect = 1e-27
Identities = 153/200 (77%), Gaps = 3/200 (2%)
Strand=Plus/Plus
Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522
|| ||||| ||||| || ||||| ||| | | || | | | || || | |||||||||
Sbjct 9389 GTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCA-TCTTCCAACTGCTTGCC 9447
Query 133523 CGCGTAAATG-AGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCT 133581
||| | || |||||||||||||| ||||||||||| |||||||| |||||| ||
Sbjct 9448 GGCGAAGATCCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCT 9507
Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641
||| | ||||| ||||||| || |||||| || | ||||| ||| ||||| ||||| |
Sbjct 9508 TGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGCG 9567
Query 133642 TTTTTACGAAAATCTGCATG 133661
| || ||||| |||||||||
Sbjct 9568 TCTTCACGAAGATCTGCATG 9587
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 483269700786200
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