Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_025412.1 Length=369360 Score E Sequences producing significant alignments: (Bits) Value seq10225 111 4e-19 seq339 104 6e-17 >seq10225 Length=9847 Score = 111 bits (122), Expect = 4e-19 Identities = 148/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 206173 CAGATATTTTGCAAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGAC 206232 ||||| ||| ||| ||||| || || || || ||||| |||| ||||| || ||| Sbjct 9126 CAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCCGAC 9067 Query 206233 ACAGTCGAATCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAA 206292 || | || || ||| ||||| || || || || || || |||||| || Sbjct 9066 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAG 9007 Query 206293 AGACTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTC 206352 | || ||||||||||| |||||| |||||||||| |||| | ||||| |||||| || Sbjct 9006 CGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCCGACTACAACATC 8947 Query 206353 CAGAAAGAGTCTACTCTTCACCTTGT 206378 ||||| ||||| ||||| ||||| || Sbjct 8946 CAGAAGGAGTCGACTCTGCACCTGGT 8921 Score = 100 bits (110), Expect = 7e-16 Identities = 140/195 (72%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGAAAGTTCTGACACAGTCGAATCA 206244 || ||||| || || || || ||||| |||| ||||| || ||||| | || Sbjct 9571 AAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCCGACACCATTGAGAAC 9512 Query 206245 GTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTT-ATCTT 206303 || ||| ||||| || || || || || || |||||| || | || ||||| Sbjct 9511 GTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAGCGGCTGGATCTT 9452 Query 206304 CGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAGTC 206363 |||||| ||||||||||||||||| |||| | ||||| |||||| ||||||| ||||| Sbjct 9451 CGCCGGCAAGCAGTTGGAAGATGGCCGGACCCTCGCCGACTACAACATCCAGAAGGAGTC 9392 Query 206364 TACTCTTCACCTTGT 206378 ||||| ||||| || Sbjct 9391 GACTCTGCACCTGGT 9377 Score = 89.7 bits (98), Expect = 1e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 204764 ACAAGGTGAAGAGTAGACTCTTTCTGGACATTATAGTCAGCCAAAGTCCTTCCATCTTCC 204823 || ||||| ||||| ||||| ||||||| || ||||| || | |||| ||||||||| Sbjct 8921 ACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCATCTTCC 8980 Query 204824 AGCTGCTTTCCGGCGAAGATAAGCCGTTGTTG 204855 |||||||| ||||||||||| ||||| || || Sbjct 8981 AGCTGCTTGCCGGCGAAGATCAGCCGCTGCTG 9012 >seq339 Length=724323 Score = 104 bits (114), Expect = 6e-17 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 || || || || || || || |||||| | || ||||| |||| ||||| |||| Sbjct 491079 AAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCAAGT---GACACCATCGAG 491135 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || ||| |||||| || || || ||||| ||| || ||| || |||| ||| Sbjct 491136 AACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGCAGCGACTGATC 491195 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 ||||| || ||||||||||||||||| | || || |||| |||||| |||||||||| Sbjct 491196 TTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAACATCCAGAAAGAA 491255 Query 206362 TCTACTCTTCACCTTGT 206378 || || || ||||| || Sbjct 491256 TCCACCCTCCACCTGGT 491272 Score = 104 bits (114), Expect = 6e-17 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 || || || || || || || ||||| |||| ||||| |||| ||||| |||| Sbjct 491535 AAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT---GACACCATCGAG 491591 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || ||| |||||| || || || ||||| ||| || ||| || |||| ||| Sbjct 491592 AACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGCAGCGACTGATC 491651 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 ||||| || ||||||||||||||||| | || || |||| |||||| |||||||||| Sbjct 491652 TTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAACATCCAGAAAGAA 491711 Query 206362 TCTACTCTTCACCTTGT 206378 || || || ||||| || Sbjct 491712 TCCACCCTCCACCTGGT 491728 Score = 104 bits (114), Expect = 6e-17 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 || || || || || || || ||||| |||| ||||| |||| ||||| |||| Sbjct 491763 AAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT---GACACCATCGAG 491819 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || ||| |||||| || || || ||||| ||| || ||| || |||| ||| Sbjct 491820 AATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGCAGCGACTGATC 491879 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 ||||| || ||||||||||||||||| | || || |||| |||||| |||||||||| Sbjct 491880 TTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAACATCCAGAAAGAA 491939 Query 206362 TCTACTCTTCACCTTGT 206378 || || || ||||| || Sbjct 491940 TCCACCCTCCACCTGGT 491956 Score = 104 bits (114), Expect = 6e-17 Identities = 142/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 || || || || || || || ||||| |||| ||||| |||| ||||| |||| Sbjct 491991 AAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGAGCCAAGT---GACACCATCGAG 492047 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || ||| |||||| || || || ||||| ||| || ||| || |||| ||| Sbjct 492048 AACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGCAGCGACTGATC 492107 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 ||||| || ||||||||||||||||| | || || |||| |||||| |||||||||| Sbjct 492108 TTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAACATCCAGAAAGAA 492167 Query 206362 TCTACTCTTCACCTTGT 206378 || || || ||||| || Sbjct 492168 TCCACCCTCCACCTGGT 492184 Score = 100 bits (110), Expect = 7e-16 Identities = 141/197 (72%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 206185 AAAACGCTCACAGGAAAAACGATCACTTTGGAAGTGGA---AAGTTCTGACACAGTCGAA 206241 || || || || || || || |||||| | || || || |||| ||||| |||| Sbjct 491307 AAGACCCTGACGGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT---GACACCATCGAG 491363 Query 206242 TCAGTAAAGCAAAAGATTCAAGAAAAAGAAGGAATTTTGCCGGACGCTCAAAGACTTATC 206301 || ||| |||||| || || || ||||| ||| || ||| || |||| ||| Sbjct 491364 AACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGCAGCGACTGATC 491423 Query 206302 TTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAGAAAGAG 206361 ||||| || ||||||||||||||||| | || || |||| |||||| |||||||||| Sbjct 491424 TTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAACATCCAGAAAGAA 491483 Query 206362 TCTACTCTTCACCTTGT 206378 || || || ||||| || Sbjct 491484 TCCACCCTCCACCTGGT 491500 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1181442172314605