Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq10225 131 2e-25 seq339 123 2e-23 >seq10225 Length=9847 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||| | ||| || | || ||||||||||| || || || Sbjct 8938 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCATCTTCCAGCTGCTTGCCGGCGAA 8997 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||||||||| ||| | || |||||||||| |||||| ||| | | Sbjct 8998 GATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 9057 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | |||||||||| ||||| || || ||||||| || || || Sbjct 9058 CTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGAC 9117 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 9118 AAAGATCTGCAT 9129 Score = 131 bits (144), Expect = 2e-25 Identities = 144/192 (75%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || || | ||| || | || ||||||||||| ||||| || Sbjct 9166 CTCCTTCTGGATGTTGTAGTCTGCGAGGGTCCGGCCATCTTCCAGCTGCTTGCCCGCGAA 9225 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||||||||| ||| | || |||||||||| |||||| ||| | | Sbjct 9226 GATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 9285 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | |||||||||| ||||| || || ||||||| || || || Sbjct 9286 CTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGAC 9345 Query 35725 AAATATCTGCAT 35736 ||| |||||||| Sbjct 9346 AAAGATCTGCAT 9357 Score = 120 bits (132), Expect = 3e-22 Identities = 143/193 (74%), Gaps = 1/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||||| | ||| || | || |||| |||||| || || || Sbjct 9394 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCATCTTCCAACTGCTTGCCGGCGAA 9453 Query 35605 TATCAA-CCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAG 35663 ||| | |||||||||||||| ||| | || |||||||||| |||||| ||| | Sbjct 9454 GATCCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGT 9513 Query 35664 TTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 | | | |||||| | |||||||||| ||||| || || ||||||| || |||| Sbjct 9514 TCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTCA 9573 Query 35724 CAAATATCTGCAT 35736 | || |||||||| Sbjct 9574 CGAAGATCTGCAT 9586 >seq339 Length=724323 Score = 123 bits (136), Expect = 2e-23 Identities = 142/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || || || | || |||| |||||| ||||| || Sbjct 491938 TCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAG 491879 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||| | ||||| || ||||||||| ||||||| ||| | | | Sbjct 491878 ATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTC 491819 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| ||||| || || ||||||| || ||||| Sbjct 491818 TCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 491759 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 491758 AAGATCTGCAT 491748 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || || || | || |||| |||||| ||||| || Sbjct 491710 TCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAG 491651 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||| | ||||| || ||||||||| ||||||| ||| | | Sbjct 491650 ATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTC 491591 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| ||||| || || ||||||| || ||||| Sbjct 491590 TCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 491531 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 491530 AAGATCTGCAT 491520 Score = 120 bits (132), Expect = 3e-22 Identities = 141/191 (74%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || || || | || |||| |||||| ||||| || Sbjct 492166 TCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAG 492107 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||| | ||||| || ||||||||| ||||||| ||| | | Sbjct 492106 ATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTC 492047 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||||| ||||| || || ||||||| || ||||| Sbjct 492046 TCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACG 491987 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 491986 AAGATCTGCAT 491976 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || || || | || |||| |||||| ||||| || Sbjct 491254 TCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAG 491195 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||| | ||||| || ||||||||| ||||||| ||| | | Sbjct 491194 ATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTC 491135 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | |||||||| | ||||| || || ||||||| || ||||| Sbjct 491134 TCGATGGTGTCACTTGGCTCCACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACG 491075 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 491074 AAGATTTGCAT 491064 Score = 111 bits (122), Expect = 1e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || || |||||||| |||| || || || | || |||| |||||| ||||| || Sbjct 491482 TCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAG 491423 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 |||| ||||||||||| | ||||| || ||||||||| ||||||| ||| | | Sbjct 491422 ATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTC 491363 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | ||||| || | || ||||| | ||||| || || ||||||| || ||||| Sbjct 491362 TCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACG 491303 Query 35726 AATATCTGCAT 35736 || |||||||| Sbjct 491302 AAGATCTGCAT 491292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450652698825400