Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq671 98.7 8e-16 seq463 89.7 4e-13 seq297 89.7 4e-13 >seq671 Length=197489 Score = 98.7 bits (108), Expect = 8e-16 Identities = 148/208 (71%), Gaps = 2/208 (1%) Strand=Plus/Minus Query 77271 CCTCATTGCCTTTGTATCCTGCGTGTCCTGGGATGTGCAGCCAGACAACCTCCAGCTCCA 77330 |||| || ||||||| || ||| || || | || || ||| || || | | || Sbjct 46219 CCTCGTTCCCTTTGTGACCGCTGTGCCCCGGAACGTACATCCACGAGACTTCAATCCCCT 46160 Query 77331 AATTGAGTTGGTCCAGCTTCATAAAGTCATCCTTGTTGACAACTGA-CCCTCCGCCATGC 77389 || || | ||| ||| || || || |||||||| || || | ||| ||| | | Sbjct 46159 CGTTCAGCTTGTCAAGCCTCTCGAAATCTTCCTTGTTCACCACCGGGCCCCCCGTGCT-C 46101 Query 77390 AGCCTCCAGCCGTTCTGCTTCCAGTTCTTAACCCACTTAGTCACACCATTGATGGTGAAC 77449 ||| |||||| |||| |||||||||||| |||||||| || | || |||||||||||| Sbjct 46100 AGCACCCAGCCCTTCTTCTTCCAGTTCTTCACCCACTTGGTGATGCCGTTGATGGTGAAC 46041 Query 77450 ATGCTGTCTGTGTAGACGACCAGCTTCT 77477 ||||||| ||||| | || ||||||| Sbjct 46040 TTGCTGTCCGTGTACAGCACGAGCTTCT 46013 >seq463 Length=246817 Score = 89.7 bits (98), Expect = 4e-13 Identities = 82/104 (79%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 41095 ATGGTGAACTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGT 41154 |||| || |||||||| || |||| || |||| | |||| ||||||| ||||| || | Sbjct 226726 ATGGAGAGCTGTCATGCCAGCTGTACCAGCGATCGGCTGACCTGGGACTTGGGGTGCCCT 226667 Query 41155 TTAACATAGCGAGTTATGCTCTGCTCACGTATATGATTGCACAC 41198 | ||||| || || || || |||||||| || |||||||||||| Sbjct 226666 TCAACATCGCTAGCTACGCACTGCTCACCTACATGATTGCACAC 226623 >seq297 Length=420882 Score = 89.7 bits (98), Expect = 4e-13 Identities = 84/107 (79%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 43913 CAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAAAAT 43972 || ||||| || | |||| |||||||| || ||||| || ||||| || || || || Sbjct 394250 CAGGAAGTGCAGATCACAGAGGCACGATGCTTCTATGGCTTCCAAATCGCAATGGAGAAC 394309 Query 43973 ATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGA 44019 || || ||||| |||||||||||||| || || ||||||||||| || Sbjct 394310 ATCCACTCGGAGATGTACAGTCTTCTCATCGACACGTACATCAAGGA 394356 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397334875905025