Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq10225 102 7e-17 seq339 84.2 2e-11 >seq10225 Length=9847 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || ||||| |||| ||| | || || || || || || |||||||| Sbjct 9129 TGCCTCCCCTCAGCCGCAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTG 9188 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | ||||| ||||| || || ||| | || || ||||| || ||||| | Sbjct 9189 CGAGGGTCCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAG 9248 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || ||||||| || | | | || | ||||| | ||| || | Sbjct 9249 GGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCA 9308 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||||||||| || || |||||||| ||||| Sbjct 9309 CCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 9357 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| || | || ||||| |||| || | || || || || || || ||||||||| Sbjct 8902 GCCGCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 8961 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 | | | || | ||||| ||||| || |||||| | || || ||||| || ||||| || Sbjct 8962 GAGGGTCCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGG 9021 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || ||||||| || | | | || | ||||| | ||| || || Sbjct 9022 GATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCAC 9081 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || || | ||||||||||| || || |||||||| ||||| Sbjct 9082 CTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 9129 Score = 98.7 bits (108), Expect = 8e-16 Identities = 167/241 (69%), Gaps = 1/241 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 ||||||| | || ||||| |||| || | || || || || || || ||||||||| Sbjct 9357 TGCCTCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 9416 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATG-AGACGCTGTTGATCCGGC 27137 | | | || | ||||| | ||| || |||||| | || || ||||| || ||||| Sbjct 9417 CGAGGGTCCGGCCATCTTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGA 9476 Query 27138 GGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCA 27197 || | ||||| || || ||||||| || | | | || | ||||| | ||| || Sbjct 9477 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCC 9536 Query 27198 ACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATAGCTGCTAAA 27257 || || || || || | ||||||||||| || ||||| ||||| ||||| | ||||| Sbjct 9537 ACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATGTCGCCTAAA 9596 Query 27258 A 27258 | Sbjct 9597 A 9597 >seq339 Length=724323 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | |||| |||| || | || || ||||| || || ||||||||| Sbjct 491292 TGCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGG 491233 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | ||||| | ||| || || ||| | || || ||||| || || || | Sbjct 491232 ACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAG 491173 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || |||||| || | | | || | ||||| | | || | Sbjct 491172 GAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCA 491113 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||||||||| || ||||| ||||||||||| Sbjct 491112 CCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 491064 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || || | |||| |||| || | || || ||||| || || ||||||||| Sbjct 491520 TGCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGG 491461 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 || |||| | ||||| | ||| || || ||| | || || ||||| || || || | Sbjct 491460 ACAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAG 491401 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | || || || || |||||| || | | | || | ||||| | | |||| Sbjct 491400 GAATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCAA 491341 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||| || | ||||||||||| || ||||| ||||| ||||| Sbjct 491340 CCTCGAGAGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424804901905560