Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq3381 86.0 8e-12 seq297 86.0 8e-12 >seq3381 Length=37224 Score = 86.0 bits (94), Expect = 8e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 179956 TTCCCACGGAGAGGGAACACACCGTAGTGATCACGACCAACCACAGAGAGACCAGCAACT 180015 ||||||||||||||||| | || ||||| ||||| || || ||| || |||| ||| Sbjct 29483 TTCCCACGGAGAGGGAAGATTCCATAGTGGTCACGCCCCACAACACCCAGCCCAGAAACA 29542 Query 180016 GCGAGGGTCTTCGCGGAATCACCCTCCGTCACGATGAGCGTACACTT 180062 || || ||||| || || || |||||||||| ||||| || ||||| Sbjct 29543 GCTAGAGTCTTGGCCGAGTCTCCCTCCGTCAAAATGAGGGTGCACTT 29589 >seq297 Length=420882 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 130035 CCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCT 130094 ||||||||||| ||||| ||||| ||||| || || ||||||||||| ||||||| Sbjct 395360 CCTCGTCACGGCTAATGAGCTCATTGGAGAATGTGAGGCCGGGCATGAGACCACGCTTCT 395301 Query 130095 TCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACA 130144 ||| |||||| || | ||| || || || |||||||| ||||| ||| Sbjct 395300 TCAGCCAGAAGATGGAGGCAAACGACCCCGAAAAGAAGATGCCCTCGACA 395251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618241900347800