Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq3381 86.0 7e-12 >seq3381 Length=37224 Score = 86.0 bits (94), Expect = 7e-12 Identities = 94/125 (75%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 117305 GTGAAAATGTAACGAGAGCTTGCAGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGT 117364 ||||| ||||| |||| ||| |||||||||||||| ||| || || || || ||||| Sbjct 25809 GTGAAGATGTATCGAGGGCTGGCAGCATCCTTGCCGCCATTTAGGCGGGTTCCAAATTGG 25868 Query 117365 CCACTCGGCTCCAAGAGGTTCAGGTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACA 117424 || | |||| || || || | ||| ||| ||| |||||||| || |||||| |||| Sbjct 25869 CCGATGGGCTGCAGGACATTGATGTTATTGCTGCCAACAAAGTTCTGGGCCAAGCTGACG 25928 Query 117425 ATCGT 117429 || || Sbjct 25929 ATAGT 25933 Score = 82.4 bits (90), Expect = 8e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 152029 GTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTGT 152088 |||||||||||||| | |||||| ||||||||||| || || || |||||||| || Sbjct 25809 GTGAAGATGTATCGAGGGCTGGCAGCATCCTTGCCGCCATTTAGGCGGGTTCCAAATTGG 25868 Query 152089 CCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAA 152141 || ||||| |||| |||| ||| ||| ||| || || ||||| ||||| Sbjct 25869 CCGATGGGCTGCAGGACATTGATGTTATTGCTGCCAACAAAGTTCTGGGCCAA 25921 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547044960799000