Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq99 307 1e-78 seq15077 140 4e-28 >seq99 Length=974049 Score = 307 bits (340), Expect = 1e-78 Identities = 665/984 (68%), Gaps = 33/984 (3%) Strand=Plus/Minus Query 13613 CGTGAACATGACGGCCGACTGCGTGGCCTTCGTGAAAGACAGGGGGTATCTCGTGAGG-- 13670 ||||| |||||| |||||||| || ||| | |||||| |||| ||||| | Sbjct 382308 CGTGAGGATGACGCGCGACTGCGACGCGTTCAAGCGGGACAGGAGGTA---CGTGACGGT 382252 Query 13671 -CCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 || |||||| ||| |||| | || |||||||||||||| | ||| ||||||| Sbjct 382251 GCCGCTGAGCGAGGAGGAGGCGGCCTTCCCCATCGCCTACTCCGTGGTGGCCCACCACCG 382192 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 | || ||| | ||| | || ||| | ||||||||||| ||||||||| |||||||| | Sbjct 382191 CGTGGACATGCTGGAGAGGCTGCTGCGCGCCATCTACGCGCCGCAGAACGTCTACTGCCT 382132 Query 13790 CCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCG-GCCATCGCCAGGT 13848 |||||||||| ||||| | || || | | |||| || || ||||| || Sbjct 382131 CCACGTGGACCAGAAGTC-GCCGCCGCCCTACCAAGAGGCGGTGCGCGCTCTCGCCGCGT 382073 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 ||||||| ||||| | ||||| ||||| | | |||||| ||| ||||||| | Sbjct 382072 GCTTCCCCAACGTCTTCATGGCCAGCCGGCAGGAGCGCGTGGTCTACACCTCCTGGCTGC 382013 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATGTCGGACCTGGACGCCTCCCCCGTCAAGTGGAGGT 13968 |||||||||||||||||| ||||||| |||||| | ||| | || |||| || Sbjct 382012 GCGTGCAGGCCGACCTCAACTGCATGCGGGACCTCGTGGCCGCGCCGCAGCCCTGGAAGT 381953 Query 13969 ACCTGCTCAACCTGTGCGGGATGGACTTCCCGCTCAAGACCAACCTGGAGATCGTGCGGG 14028 | | ||||||||||||| |||||||||| | || |||||||||||||| ||||| | Sbjct 381952 ATTTCATCAACCTGTGCGGCCTGGACTTCCCCATTAAAACCAACCTGGAGATGGTGCGAG 381893 Query 14029 CGCTGAAGGCCCTGGGCGGCAAGAACGCCCTGGAGAGCGAGGGCATGCCCAACCACAAGC 14088 ||||| ||||| |||| ||||| | ||||| | | || ||| | |||| Sbjct 381892 CGCTGCGCGCCCTCAACGGCGAGAACAGCATGGAGTCCATGCACACTCCCGGCGGCAAGG 381833 Query 14089 TGCACCGCATCAGGAAGA---GGCACGTGGTGGCCAGCGGCGGCGTGGTGGTCAACACCG 14145 || || || ||| | |||| | | | | || |||| | | | || ||| | Sbjct 381832 TGGGTCG---GTGGCAGATCCGCCACGAGATCGTGAACGACGGCCT-GCGCTC--CACGG 381779 Query 14146 GCAGGAACAAGGCCCCGCCGCCGCTCAGGATCCCCATCTTTGCGGGAAACGCTTACTTTG 14205 || ||| ||| |||| ||||| || | ||||| || | || ||||| ||| | | Sbjct 381778 GCGAGAAGAAGTCCCCTCCGCCCATCCCCACGCCCATGTTCTCCGGGAACGCGTACATCG 381719 Query 14206 CGGTCACCCGGGAGTTCGTGGACTTCGTCCTCAAGGACGAGCCGGTGGCCCTGCTCATGC 14265 ||| || || | ||||| || ||| || | ||| ||| | ||||||| Sbjct 381718 TGGTGACGCGCGCCTTCGTCGAGCACGTGCTGAGCGACCCCACGGCGCGGGCGCTCATGG 381659 Query 14266 ACTGGTTCGAGGACACGTACAGCCCCGACGAGCACCTGTGGGCCACCGTGCAGAGAATGT 14325 | ||| ||||||||| |||||||||||||||||||||||| || ||||| | || Sbjct 381658 AGTGGGAGAAGGACACGTTCAGCCCCGACGAGCACCTGTGGGCGACGCTGCAGCGCCTGC 381599 Query 14326 ACGGGACGCCCGGGGGGATCCCCG----TTCACGTCAAGTACGACACCTCGGACATGTGG 14381 |||| ||| ||| ||| || |||| |||||||||| ||||||| | Sbjct 381598 CCGGGGTGCC----GGGCTCCACGCCGCCGCACGACAAGTACGACGTGGAGGACATGATG 381543 Query 14382 GCCAAGGTCAGGTTCGTCAAGTGGCACTACTACGAGGGGGATATCAAGAAAGGGGCCCTG 14441 |||| | | |||| |||| ||| ||||| || | | |||||||| Sbjct 381542 GCCATCGCGCGCCTCGTGCGGTGGTCTTACATGGAGGGCGACACTCTGCAAGGGGCCGCC 381483 Query 14442 TACCCGCCTTGCGACGGCATCCACGTCCACGCCATCTGCATCTTCGGGTCCGGCGACGTG 14501 |||||||| ||| ||||| |||| | | |||||||||||| | | || ||| || Sbjct 381482 TACCCGCCCTGCCGCGGCACCCACATGCGGGCCATCTGCATCAACAGCGCCAAGGACCTG 381423 Query 14502 AAGTG---GCTGAAG-AGCGTCCCGCACCTGTTCGCCAACAAGTTCGACGACGAGACGGA 14557 ||| ||| ||| |||| ||| ||||||| ||||||| | ||| || ||| Sbjct 381422 GCGTGGGTGCTCAAGCAGCG----GCATCTGTTCGTCAACAAGCTGGACTCGGACGTGGA 381367 Query 14558 CGAGTTCGCCGTGCGCTGTCTGGA 14581 |||| | ||||||| ||| || || Sbjct 381366 CGAGCTGGCCGTGCACTGCCTCGA 381343 >seq15077 Length=35091 Score = 140 bits (154), Expect = 4e-28 Identities = 192/266 (72%), Gaps = 2/266 (1%) Strand=Plus/Plus Query 13670 GCCCCTGAGCCTGGAAGAGGTCGAGTTTCCCATCGCCTACTCGATCGTGATCCACCACAA 13729 ||| ||||||| || |||| | || |||||||||||||| | || ||||||| Sbjct 28072 GCCGCTGAGCCGCGAGGAGGAGGCCTTCCCCATCGCCTACTCCGTGGTCGCCCACCACCG 28131 Query 13730 GATCGAGATGTTCGAGCGCCTCCTGAGGGCCATCTACGCCCCGCAGAACCTCTACTGCGT 13789 | || ||| | ||| | || ||| | ||| |||||||||||||||||||||||||| | Sbjct 28132 CGTGGACATGCTGGAGAGGCTGCTGCGTGCCGTCTACGCCCCGCAGAACCTCTACTGCCT 28191 Query 13790 CCACGTGGACTCCAAGTCCGGCGACGAGTTCATCCGGGGCGTCTCG-GCCATCGCCAGGT 13848 |||||||||| |||||||| | || | | | | |||| | || ||| ||||| | Sbjct 28192 CCACGTGGACGCCAAGTCCCCCCGCGCCTACCT-GGAGGCGGCGCGCGCCCTCGCCGCCT 28250 Query 13849 GCTTCCCTAACGTGGCCCTGGCCCACCGGCTGCACGACGTGGTGTACGGCTCCTGGAGTC 13908 ||||||| |||||| | |||| | ||| | || || |||| ||| ||| Sbjct 28251 GCTTCCCCAACGTGTTCGTGGCGGCACACCTGGAGAGAGTCGTCTACGCCTCGTGGTCGA 28310 Query 13909 GCGTGCAGGCCGACCTCAGCTGCATG 13934 | |||||||||||||||| ||||||| Sbjct 28311 GAGTGCAGGCCGACCTCAACTGCATG 28336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658533302828800