Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq10225 107 1e-18 >seq10225 Length=9847 Score = 107 bits (118), Expect = 1e-18 Identities = 164/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 34478 CGCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTG 34537 ||||||| || || |||| |||| || ||||| |||||| || ||||| || || | Sbjct 8901 CGCCGCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 8960 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || | ||||| || || || ||||| || || | ||||| |||||||| | Sbjct 8961 CGAGGGTCCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAG 9020 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || ||| | ||| ||||| | |||| Sbjct 9021 GGATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCC 9079 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || |||| ||| || || || || || | ||| || ||||| ||||||||| Sbjct 9080 ACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATG 9130 Score = 105 bits (116), Expect = 4e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| ||| ||||| |||||| || ||||| || |||| Sbjct 9130 GCCTCCCCTCAGCCGCAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGC 9189 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | ||||| || || || || || || || | ||||| |||||||| || Sbjct 9190 GAGGGTCCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAGG 9249 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||| || | || ||| | ||| ||||| | ||||| Sbjct 9250 GATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCA 9308 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 | |||| ||| || || || || || | ||| || ||||| ||||||||| Sbjct 9309 CCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATG 9358 Score = 93.3 bits (102), Expect = 3e-14 Identities = 162/232 (70%), Gaps = 3/232 (1%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 ||| || || || |||| |||| || ||||| |||||| || ||||| || || | Sbjct 9358 GCCTCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGC 9417 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAAC-GCTGTTGGTCCGGCG 34597 || || || | ||||| | || || ||||| || || | | |||| |||||||| | Sbjct 9418 GAGGGTCCGGCCATCTTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGAG 9477 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| |||| || | || ||| | ||| ||||| | |||| Sbjct 9478 GGATGCCCTCCTTGTCCTGGATC-TTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCC 9536 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGT 34708 || |||| ||| || || || || || | ||| ||||| || |||||||||| Sbjct 9537 ACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATGT 9588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314633686646165