Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq10225 134 1e-26 >seq10225 Length=9847 Score = 134 bits (148), Expect = 1e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || || || ||||| | || Sbjct 9130 CATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTC 9071 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| ||||| || || || ||||| || ||||| || || || || Sbjct 9070 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 9011 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||||||||| || ||||||| | |||| | |||| ||||| Sbjct 9010 GCAGCGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCCGACTACAA 8951 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGC 27215 ||| || ||||||||||| | || |||| |||| || |||| ||| Sbjct 8950 CATCCAGAAGGAGTCGACTCTGCACCTGGTCCTGCGGCTGAGGGGCGGC 8902 Score = 134 bits (148), Expect = 1e-26 Identities = 175/241 (73%), Gaps = 1/241 (0%) Strand=Plus/Minus Query 26978 TTTATACGCCATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGT 27037 |||| || ||||||||| || || || || ||||| |||||| | || || || || || Sbjct 9596 TTTAGGCGACATGCAGATCTTCGTGAAGACGCTGACGGGCAAGACCATCACCCTGGAGGT 9537 Query 27038 GGAACCGTCCGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACC 27097 ||| | |||||| | ||||||| ||||| || || || ||||| || ||||| || Sbjct 9536 GGAGGCCTCCGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCC 9477 Query 27098 ACCCGATCAACAGCGTTTA-ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTT 27156 || || || ||||| | || | ||||||||| || |||||||| | |||| | Sbjct 9476 TCCGGACCAGCAGCGGCTGGATCTTCGCCGGCAAGCAGTTGGAAGATGGCCGGACCCTCG 9417 Query 27157 CCGATTACAACATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCA 27216 |||| |||||||| || ||||||||||| | || |||| |||| || |||| |||| Sbjct 9416 CCGACTACAACATCCAGAAGGAGTCGACTCTGCACCTGGTCCTGCGGCTGAGGGGAGGCA 9357 Query 27217 T 27217 | Sbjct 9356 T 9356 Score = 132 bits (146), Expect = 4e-26 Identities = 168/231 (73%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 26987 CATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTC 27046 ||||||||| ||||| || || ||||| |||||| | || || || || ||||| | || Sbjct 9358 CATGCAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTC 9299 Query 27047 CGACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCA 27106 |||| | ||||||| ||||| || || || ||||| || ||||| || || || || Sbjct 9298 CGACACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCA 9239 Query 27107 ACAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAA 27166 ||||| | || | ||| ||||| || ||||||| | |||| | | || ||||| Sbjct 9238 GCAGCGGCTGATCTTCGCGGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCAGACTACAA 9179 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||| || ||||||||||| | ||| |||| |||| || |||| ||||| Sbjct 9178 CATCCAGAAGGAGTCGACTCTGCATCTGGTCCTGCGGCTGAGGGGAGGCAT 9128 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434782460817600