Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_029132.1 Length=140122 Score E Sequences producing significant alignments: (Bits) Value seq463 159 3e-34 >seq463 Length=246817 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 6620 TGAGCGATCATGTACGTGAGCAGAGCGTAACTAGCAATGTTGAACGGCACCCCTAACCCC 6679 || || |||||||| |||||||| ||||| ||||| |||||||| |||||||| | ||| Sbjct 226624 TGTGCAATCATGTAGGTGAGCAGTGCGTAGCTAGCGATGTTGAAGGGCACCCCAAGTCCC 226683 Query 6680 ATGTCTCCCGATCGTTGATAGAGCTGGCAGGACAGCTCCCCATTCGCGACGTAGAATTGG 6739 | ||| ||||||| || || |||||||| |||||||| |||| |||||||||||||||| Sbjct 226684 AGGTCAGCCGATCGCTGGTACAGCTGGCATGACAGCTCTCCATCCGCGACGTAGAATTGG 226743 Query 6740 CAGAGGGTGTGGCACGGGGGGAGCGCCATCAGAGGGAGATC 6780 || || | |||||| || || |||||||| || || | ||| Sbjct 226744 CACAGTGCGTGGCATGGAGGCAGCGCCATGAGTGGCACATC 226784 Score = 159 bits (176), Expect = 3e-34 Identities = 132/161 (82%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 34565 GATCTCCCTCTGATGGCGCTCCCCCCGTGCCACACCCTCTGCCAATTCTACGTCGCGAAT 34624 ||| | || || |||||||| || || |||||| | || |||||||||||||||||| || Sbjct 226784 GATGTGCCACTCATGGCGCTGCCTCCATGCCACGCACTGTGCCAATTCTACGTCGCGGAT 226725 Query 34625 GGGGAGCTGTCCTGCCAGCTCTATCAACGATCGGGAGACATGGGGTTAGGGGTGCCGTTC 34684 || |||||||| |||||||| || || ||||||| ||| |||| | |||||||| ||| Sbjct 226724 GGAGAGCTGTCATGCCAGCTGTACCAGCGATCGGCTGACCTGGGACTTGGGGTGCCCTTC 226665 Query 34685 AACATTGCTAGTTACGCTCTGCTCACGTACATGATCGCTCA 34725 ||||| ||||| ||||| |||||||| |||||||| || || Sbjct 226664 AACATCGCTAGCTACGCACTGCTCACCTACATGATTGCACA 226624 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 6899 TACTCCGCCCCAAAGTGTCTCCACTGGAACCCGTAGACCGGGCCCAAGTCGCCCTCCTCC 6958 || || || || ||||| | ||||||||| |||||||| || |||| ||| || ||||| Sbjct 227317 TAGTCGGCGCCGAAGTGGCGCCACTGGAAGCCGTAGACAGGACCCAGGTCTCCTTCCTCG 227376 Query 6959 CGAGATGGGAACCCCCGCTTGTCCAGAAAGTCTCGAGACCCGTGAGCGTCCCAGATCTTC 7018 || || || ||| || |||||| ||| | || || |||| |||||||| ||||| Sbjct 227377 CGCTCGGGAAAGCCCTGCCGGTCCAGGAAGGCCCGCGAGCCGTTGGCGTCCCAAATCTTG 227436 Query 7019 ACCCCCCGGGACGAGAGCTCCTTGGTGTTCGTGG 7052 || ||| || ||||||||||||| || |||| Sbjct 227437 ACGCCCTTGGCGGAGAGCTCCTTGGCATTGGTGG 227470 Score = 102 bits (112), Expect = 7e-17 Identities = 115/154 (75%), Gaps = 0/154 (0%) Strand=Plus/Minus Query 34293 CCACGAACACCAAGGAGCTCTCGTCCCGGGGGGTGAAGATCTGGGACGCTCACGGGTCTC 34352 |||| || ||||||||||||| || ||| || ||||| |||||||| |||| || | Sbjct 227470 CCACCAATGCCAAGGAGCTCTCCGCCAAGGGCGTCAAGATTTGGGACGCCAACGGCTCGC 227411 Query 34353 GAGACTTTCTGGACAAGCGGGGGTTCCCATCTCGGGAGGAGGGCGACTTGGGCCCGGTCT 34412 | | ||| |||||| || ||| || || || ||||| || ||| |||| || |||| Sbjct 227410 GGGCCTTCCTGGACCGGCAGGGCTTTCCCGAGCGCGAGGAAGGAGACCTGGGTCCTGTCT 227351 Query 34413 ACGGGTTCCAGTGGAGACACTTTGGGGCGGAGTA 34446 |||| ||||||||| | ||||| || || || || Sbjct 227350 ACGGCTTCCAGTGGCGCCACTTCGGCGCCGACTA 227317 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448122289983600