Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq339 196 1e-44 seq10225 194 4e-44 >seq339 Length=724323 Score = 196 bits (216), Expect = 1e-44 Identities = 173/215 (80%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||| ||||| |||||||| || || | || || | |||||| Sbjct 491503 AGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCT 491444 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| |||||||| || || || ||||| ||||||| |||||||||||| Sbjct 491443 TCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC 491384 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| || ||||| |||||||||||| ||| ||||||||||||||||| Sbjct 491383 TGGATCTTTGCCTTGACGTTCTCGATGGTGTCA---CTTGGCTCAACCTCGAGAGTGATG 491327 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| || || | |||||| Sbjct 491326 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491292 Score = 187 bits (206), Expect = 6e-42 Identities = 171/215 (80%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||| ||||| |||||||| || || | || || | |||||| Sbjct 491275 AGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCT 491216 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| |||||||| || || || ||||| ||||||| |||||||||||| Sbjct 491215 TCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC 491156 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| || ||||| |||||||||||| ||| || |||||||||||||| Sbjct 491155 TGGATCTTTGCCTTGACGTTCTCGATGGTGTCA---CTTGGCTCCACCTCGAGAGTGATG 491099 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| || || | ||||| Sbjct 491098 GTCTTGCCCGTCAGGGTCTTCACGAAGATTTGCAT 491064 Score = 181 bits (200), Expect = 2e-40 Identities = 170/215 (79%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||| ||||| |||||||| || || | || || | |||||| Sbjct 491731 AGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCT 491672 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| |||||||| || || || ||||| ||||||| |||||||||||| Sbjct 491671 TCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC 491612 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| || ||||| |||||||||||| ||| || ||||| || ||||| Sbjct 491611 TGGATCTTTGCCTTGACGTTCTCGATGGTGTCA---CTTGGCTCCACCTCCAGGGTGATG 491555 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| || || | |||||| Sbjct 491554 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491520 Score = 181 bits (200), Expect = 2e-40 Identities = 170/215 (79%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||| ||||| |||||||| || || | || || | |||||| Sbjct 492187 AGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCT 492128 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| |||||||| || || || ||||| ||||||| |||||||||||| Sbjct 492127 TCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC 492068 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| || ||||| |||||||||||| ||| || ||||| || ||||| Sbjct 492067 TGGATCTTTGCCTTGACGTTCTCGATGGTGTCA---CTTGGCTCCACCTCCAGGGTGATG 492011 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| || || | |||||| Sbjct 492010 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491976 Score = 178 bits (196), Expect = 3e-39 Identities = 169/215 (79%), Gaps = 6/215 (3%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| || ||||| ||||| |||||||| || || | || || | |||||| Sbjct 491959 AGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCT 491900 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||| ||||||||| |||||||| || || || ||||| ||||||| |||||||||||| Sbjct 491899 TCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCC 491840 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTT---TCAACCTCGAGAGTGATC 211079 ||||||||| || || || |||||||||||| ||| || ||||| || ||||| Sbjct 491839 TGGATCTTTGCCTTGACATTCTCGATGGTGTCA---CTTGGCTCCACCTCCAGGGTGATG 491783 Query 211080 GTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| ||||| || ||||| || || | |||||| Sbjct 491782 GTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCAT 491748 >seq10225 Length=9847 Score = 194 bits (214), Expect = 4e-44 Identities = 170/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| ||||| || |||||||| || || || ||||||| |||||| Sbjct 8918 AGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCATCT 8977 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || ||||| ||||| | || ||||||||| Sbjct 8978 TCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 9037 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| ||| || ||||| || ||||| ||| Sbjct 9038 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTC 9097 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 9098 TTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 9129 Score = 188 bits (208), Expect = 2e-42 Identities = 169/212 (80%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| || || ||||| ||||| || |||||||| || || || ||||||| |||||| Sbjct 9146 AGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTCCGGCCATCT 9205 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCC 211022 |||||||||||||| |||||||| || || || ||||| ||||| | || ||||||||| Sbjct 9206 TCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCC 9265 Query 211023 TGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTC 211082 |||||||| || ||||| || |||||||| ||| || ||||| || ||||| ||| Sbjct 9266 TGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTC 9325 Query 211083 TTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 || ||||| || ||||| ||||| | |||||| Sbjct 9326 TTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 9357 Score = 178 bits (196), Expect = 3e-39 Identities = 168/213 (79%), Gaps = 1/213 (0%) Strand=Plus/Plus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 ||||| ||||| ||||| ||||| || |||||||| || || || ||||||| |||||| Sbjct 9374 AGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCATCT 9433 Query 210963 TCCAGCTGCTTGCCTGCGAAGATA-AGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTC 211021 |||| ||||||||| |||||||| || || || ||||| ||||| | || |||||||| Sbjct 9434 TCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTC 9493 Query 211022 CTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGT 211081 ||||||||| || ||||| || |||||||| ||| || ||||| || ||||| || Sbjct 9494 CTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGT 9553 Query 211082 CTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| || ||||| || || | |||||| Sbjct 9554 CTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 9586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1158780634866825