Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq10225 102 7e-17 seq339 89.7 4e-13 >seq10225 Length=9847 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | |||| ||| || || ||| || || || || || || Sbjct 9127 CATGCCTCCCCTCAGCCGCAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 9186 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || || || || | || || ||||| |||||||| || || || ||||||||||| | Sbjct 9187 TGCGAGGGTCCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGG 9246 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTC 39233 || | || ||| |||||| ||| || |||| || | | || ||| | ||| Sbjct 9247 AGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCTC 9306 Query 39234 CACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| |||| ||||| | || ||||||||||| || |||||||| ||||| Sbjct 9307 CACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCAT 9357 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || || || || ||||| || || || | || || ||||| ||||| || || Sbjct 8938 CTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCATCTTCCAGCTGCTTGCCGGCGAA 8997 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || || ||||||||||| | || | || ||| |||||| ||| || |||| | Sbjct 8998 GATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 9057 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | || ||| | |||||| |||| ||||| | || ||||||||||| || || Sbjct 9058 CTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGAC 9117 Query 39273 AAAGATTTGCAT 39284 |||||| ||||| Sbjct 9118 AAAGATCTGCAT 9129 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/232 (68%), Gaps = 1/232 (0%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || |||||| || | || | |||| || || || ||| || || || || || || Sbjct 9355 CATGCCTCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 9414 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATA-AGACGCTGCTGGTCGG 39172 ||| || || || | || || | ||| ||||| || || || || ||||||||||| | Sbjct 9415 GGCGAGGGTCCGGCCATCTTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCG 9474 Query 39173 TGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACT 39232 || | || ||| |||||| ||| || |||| || | | || ||| | || Sbjct 9475 GAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTCTCAATGGTGTCGGAGGCCT 9534 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||| |||| ||||| | || ||||||||||| || || ||||| ||||| Sbjct 9535 CCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCAT 9586 >seq339 Length=724323 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||||| || || || || |||| || || || | || || Sbjct 491272 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 491213 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 | ||| |||||||| || || || ||||||||||||| || | || || |||||| | Sbjct 491212 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 491153 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | || || || | |||||| || | ||||| | || Sbjct 491152 ATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCGAGAGTGATGGTCTTG 491093 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| || || || ||||||||||| Sbjct 491092 CCCGTCAGGGTCTTCACGAAGATTTGCAT 491064 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||||| || || || || |||| || || || | || || Sbjct 491728 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 491669 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 | ||| |||||||| || || || ||||||||||||| || | || || |||||| | Sbjct 491668 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 491609 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | || || || | |||||| |||| ||||| | || Sbjct 491608 ATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTG 491549 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| || || || ||||| ||||| Sbjct 491548 CCCGTCAGGGTCTTCACGAAGATCTGCAT 491520 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||||| || || || || |||| || || || | || || Sbjct 491956 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 491897 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 | ||| |||||||| || || || ||||||||||||| || | || || |||||| | Sbjct 491896 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 491837 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | || || || | |||||| |||| ||||| | || Sbjct 491836 ATCTTTGCCTTGACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTG 491777 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| || || || ||||| ||||| Sbjct 491776 CCCGTCAGGGTCTTCACGAAGATCTGCAT 491748 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 39076 ACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCA 39135 |||| || || ||| ||||| || || || || |||| || || || | || || Sbjct 492184 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 492125 Query 39136 AGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATG 39195 | ||| |||||||| || || || ||||||||||||| || | || || |||||| | Sbjct 492124 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 492065 Query 39196 ATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTT 39255 || || |||| || | | || || || | |||||| |||| ||||| | || Sbjct 492064 ATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTTG 492005 Query 39256 CCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 |||||||| || || || ||||| ||||| Sbjct 492004 CCCGTCAGGGTCTTCACGAAGATCTGCAT 491976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429414696649565