Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq339 95.1 8e-15 >seq339 Length=724323 Score = 95.1 bits (104), Expect = 8e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || || ||||||||||| ||||| | | Sbjct 491292 ATGCAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTTGAGCCAAGT 491351 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| || ||||| ||||| | || || || || Sbjct 491352 GACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 491411 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| || ||||||| | ||||| | ||| |||||| Sbjct 491412 CAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAAC 491471 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| ||||| Sbjct 491472 ATCCAGAAAGAATCCAC 491488 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| || ||||| || ||||| ||||| || || ||||||||||| || || | | Sbjct 491064 ATGCAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGGAGCCAAGT 491123 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || ||| || ||||| ||||| | || || || || Sbjct 491124 GACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAG 491183 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || || || ||||| || ||||||| | ||||| | ||| |||||| Sbjct 491184 CAGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAAC 491243 Query 23791 ATACAAAAAGAGTCCAC 23807 || || ||||| ||||| Sbjct 491244 ATCCAGAAAGAATCCAC 491260 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337906592102540