Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_032255.1 Length=112536 Score E Sequences producing significant alignments: (Bits) Value seq10225 150 1e-31 seq339 138 8e-28 >seq10225 Length=9847 Score = 150 bits (166), Expect = 1e-31 Identities = 176/234 (75%), Gaps = 3/234 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || |||||||| || || |||||| ||||||||||| || Sbjct 9355 CATGCCTCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 9414 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAAC-GCTGCTGATCTG 44225 |||||| || | || |||| |||||| ||||| |||||| | | ||||||| || | Sbjct 9415 GGCGAGGGTCCGGCCATCTTCCAACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCG 9474 Query 44226 AAGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGAT 44284 ||| | || ||||| ||| ||||| ||| | |||| | |||||||||| || Sbjct 9475 GAGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGAC-GTTCTCAATGGTGTCGGAGGCC 9533 Query 44285 TCCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 |||||||||| || || ||||| ||||| || |||||||||||||| |||||| Sbjct 9534 TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATG 9587 Score = 149 bits (164), Expect = 5e-31 Identities = 172/229 (75%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 44111 CCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCG 44170 || || ||||| | || |||||||| || || |||||| ||||||||||| |||||| Sbjct 8903 CCGCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCG 8962 Query 44171 AGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGC 44230 || || | || ||||||||||| ||||| ||||||| |||||||| || | ||| Sbjct 8963 AGGGTCCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAGGG 9022 Query 44231 ACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCAC 44289 | || ||||| ||| ||||| || | | |||| | |||||||||| || ||||| Sbjct 9023 ATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCGGAGGCCTCCAC 9081 Query 44290 CTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| || || ||||| ||||| || ||||| || ||||| |||||| Sbjct 9082 CTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATG 9130 Score = 138 bits (152), Expect = 8e-28 Identities = 172/233 (74%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 44107 CATTCCCCCTCTCAGTCTCAACACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATC 44166 ||| || || ||||| | || ||||| || || || |||||| ||||||||||| || Sbjct 9127 CATGCCTCCCCTCAGCCGCAGGACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTC 9186 Query 44167 GGCGAGTTGGCGCTCGTCGTCCAGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGA 44226 ||||| || | || ||||||||||| || || ||||||| |||||||| || | Sbjct 9187 TGCGAGGGTCCGGCCATCTTCCAGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGG 9246 Query 44227 AGGCACACCTTCCTTTTCCGTTATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATT 44285 ||| | || ||||| ||| ||||| || | | |||| | |||||||||| || | Sbjct 9247 AGGGATGCCCTCCTTGTCCTGGATCTT-GGCCTTGACGTTCTCAATGGTGTCGGAGGCCT 9305 Query 44286 CCACCTCCACCGTAATCGTCTTTCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||||||| || || ||||| ||||| || ||||| || ||||| |||||| Sbjct 9306 CCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATG 9358 >seq339 Length=724323 Score = 138 bits (152), Expect = 8e-28 Identities = 160/213 (75%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| || || ||||||||||| |||| || ||| | || ||| Sbjct 491272 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 491213 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || || ||||||| |||||||| || | ||| | |||||||| ||| Sbjct 491212 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 491153 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | |||| | |||||||| | |||||||| | || || ||||| Sbjct 491152 ATCTT-TGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCGAGAGTGATGGTCTT 491094 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATGAT 44340 ||||| |||||||||||||||||||||||||| Sbjct 491093 GCCCGTCAGGGTCTTCACGAAGATTTGCATGAT 491061 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| || || ||||||||||| |||| || ||| | || ||| Sbjct 491728 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 491669 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || || ||||||| |||||||| || | ||| | |||||||| ||| Sbjct 491668 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 491609 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | |||| | |||||||| | |||||||||| || || ||||| Sbjct 491608 ATCTT-TGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTT 491550 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||||||||||||||||| |||||| Sbjct 491549 GCCCGTCAGGGTCTTCACGAAGATCTGCATG 491519 Score = 134 bits (148), Expect = 1e-26 Identities = 158/211 (75%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| || || ||||||||||| |||| || ||| | || ||| Sbjct 492184 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 492125 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || || ||||||| |||||||| || | ||| | |||||||| ||| Sbjct 492124 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 492065 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | |||| | |||||||| | |||||||||| || || ||||| Sbjct 492064 ATCTT-TGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTT 492006 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||||||||||||||||| |||||| Sbjct 492005 GCCCGTCAGGGTCTTCACGAAGATCTGCATG 491975 Score = 131 bits (144), Expect = 1e-25 Identities = 157/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| || || ||||||||||| |||| || ||| | || ||| Sbjct 491956 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 491897 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || || ||||||| |||||||| || | ||| | |||||||| ||| Sbjct 491896 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 491837 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | ||| | |||||||| | |||||||||| || || ||||| Sbjct 491836 ATCTT-TGCCTTGACATTCTCGATGGTGTCACTTGGCTCCACCTCCAGGGTGATGGTCTT 491778 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||||||||||||||||| |||||| Sbjct 491777 GCCCGTCAGGGTCTTCACGAAGATCTGCATG 491747 Score = 125 bits (138), Expect = 5e-24 Identities = 156/211 (74%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 44129 ACCAGGTGAAGCGTGCTCTCCTTTTGGATGTTGTAATCGGCGAGTTGGCGCTCGTCGTCC 44188 |||||||| || ||| || || ||||||||||| |||| || ||| | || ||| Sbjct 491500 ACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATCTTCC 491441 Query 44189 AGCTGCTTCCCGGCAAAGATCAAACGCTGCTGATCTGAAGGCACACCTTCCTTTTCCGTT 44248 | |||||| || || ||||||| |||||||| || | ||| | |||||||| ||| Sbjct 491440 AACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGGAATGCCTTCCTTGTCCTGG 491381 Query 44249 ATCTTCTGCTTCAATGTTC-CTATGGTGTCGGCGGATTCCACCTCCACCGTAATCGTCTT 44307 ||||| ||| | | |||| | |||||||| | || ||||| | || || ||||| Sbjct 491380 ATCTT-TGCCTTGACGTTCTCGATGGTGTCACTTGGCTCAACCTCGAGAGTGATGGTCTT 491322 Query 44308 TCCCGTGAGGGTCTTCACGAAGATTTGCATG 44338 ||||| ||||||||||||||||| |||||| Sbjct 491321 GCCCGTCAGGGTCTTCACGAAGATCTGCATG 491291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 359880693488085