Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq10225 168 2e-36 seq339 167 6e-36 >seq10225 Length=9847 Score = 168 bits (186), Expect = 2e-36 Identities = 161/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || |||||||| |||||||| ||| ||| Sbjct 9126 CAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCCGAC 9067 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| || || ||||||||||||||||| Sbjct 9066 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAG 9007 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| |||||||| |||| || ||||| || ||| || Sbjct 9006 CGGCTGATCTTCGCCGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCCGACTACAACATC 8947 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || ||||| || || Sbjct 8946 CAGAAGGAGTCGACTCTGCACCTGGT 8921 Score = 167 bits (184), Expect = 6e-36 Identities = 162/207 (78%), Gaps = 1/207 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||| || || || || || || |||||||| |||||||| ||| ||| Sbjct 9583 CAGATCTTCGTGAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCCGAC 9524 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| || || ||||||||||||||||| Sbjct 9523 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAG 9464 Query 178044 CGACT-TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGT 178102 || || ||||||||||| || ||| | |||||||| |||| || ||||| || ||| | Sbjct 9463 CGGCTGGATCTTCGCCGGCAAGCAGTTGGAAGATGGCCGGACCCTCGCCGACTACAACAT 9404 Query 178103 CCAAAAAGAATCAACACTGCATCTTGT 178129 ||| || || || || ||||| || || Sbjct 9403 CCAGAAGGAGTCGACTCTGCACCTGGT 9377 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || |||||||| |||||||| ||| ||| Sbjct 9354 CAGATCTTTGTCAAGACGCTGACGGGCAAGACCATCACCCTGGAGGTGGAGGCCTCCGAC 9295 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| ||||||||||| ||||| |||||||| || || ||||||||||||||||| Sbjct 9294 ACCATTGAGAACGTCAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCGGACCAGCAG 9235 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| || || ||||| |||||||| |||| || || || || ||| || Sbjct 9234 CGGCTGATCTTCGCGGGCAAGCAGCTGGAAGATGGCCGGACCCTCGCAGACTACAACATC 9175 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || |||||||| || Sbjct 9174 CAGAAGGAGTCGACTCTGCATCTGGT 9149 >seq339 Length=724323 Score = 167 bits (184), Expect = 6e-36 Identities = 163/208 (78%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCA--G 177981 ||||| |||||||| || || || || || || ||||| |||||||||| ||| | | Sbjct 491067 CAAATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTGG--AGCCAAGTG 491124 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| |||||| |||||||| ||||| || ||||| ||||||| Sbjct 491125 ACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGC 491184 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| |||||||| || || ||| | |||||||| | || || |||| || ||| Sbjct 491185 AGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAACA 491244 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || || || || Sbjct 491245 TCCAGAAAGAATCCACCCTCCACCTGGT 491272 Score = 163 bits (180), Expect = 7e-35 Identities = 162/208 (78%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || || Sbjct 491523 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCAAGTG 491580 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| |||||| |||||||| ||||| || ||||| ||||||| Sbjct 491581 ACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGC 491640 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| |||||||| || || ||| | |||||||| | || || |||| || ||| Sbjct 491641 AGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAACA 491700 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || || || || Sbjct 491701 TCCAGAAAGAATCCACCCTCCACCTGGT 491728 Score = 163 bits (180), Expect = 7e-35 Identities = 162/208 (78%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || || Sbjct 491979 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCAAGTG 492036 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| |||||| |||||||| ||||| || ||||| ||||||| Sbjct 492037 ACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGC 492096 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| |||||||| || || ||| | |||||||| | || || |||| || ||| Sbjct 492097 AGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAACA 492156 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || || || || Sbjct 492157 TCCAGAAAGAATCCACCCTCCACCTGGT 492184 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || ||||| |||||||| || || || Sbjct 491295 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACTCTCGAGGTTGA--GCCAAGTG 491352 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||||||||| |||||| |||||||| ||||| || ||||| ||||||| Sbjct 491353 ACACCATCGAGAACGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGC 491412 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| |||||||| || || ||| | |||||||| | || || |||| || ||| Sbjct 491413 AGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAACA 491472 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || || || || Sbjct 491473 TCCAGAAAGAATCCACCCTCCACCTGGT 491500 Score = 158 bits (174), Expect = 3e-33 Identities = 161/208 (77%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAG-- 177981 || || |||||||| || || || || || || |||||||| |||||||| || || Sbjct 491751 CAGATCTTCGTGAAGACCCTGACGGGCAAGACCATCACCCTGGAGGTGGA--GCCAAGTG 491808 Query 177982 ACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGC 178041 ||||||||||||| ||||| |||||| |||||||| ||||| || ||||| ||||||| Sbjct 491809 ACACCATCGAGAATGTCAAGGCAAAGATCCAGGACAAGGAAGGCATTCCTCCCGACCAGC 491868 Query 178042 AACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACG 178101 | ||||| |||||||| || || ||| | |||||||| | || || |||| || ||| Sbjct 491869 AGCGACTGATCTTCGCGGGCAAGCAGTTGGAAGATGGCCGCACGCTGTCCGACTACAACA 491928 Query 178102 TCCAAAAAGAATCAACACTGCATCTTGT 178129 |||| |||||||| || || || || || Sbjct 491929 TCCAGAAAGAATCCACCCTCCACCTGGT 491956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203345552735970