Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Petromyzon_20marinus_20[genbank_20GCA_5F000148955.1_202010-10-07] 25,005 sequences; 885,534,757 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq10225 154 1e-32 seq339 143 2e-29 >seq10225 Length=9847 Score = 154 bits (170), Expect = 1e-32 Identities = 176/234 (75%), Gaps = 8/234 (3%) Strand=Plus/Plus Query 41634 CGCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGG 41693 ||||||| | || || | ||||| ||||| || ||||||||| ||||| ||||||| Sbjct 8901 CGCCGCCCCTCAGCCGCAGGACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGG 8960 Query 41694 AGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGG 41753 |||||| || | || || ||||||||||||||||| ||||| ||||| ||||||| | Sbjct 8961 CGAGGGTCCGGCCATCTTCCAGCTGCTTGCCGGCGAAGATCAGCCGCTGCTGGTCCGGAG 9020 Query 41754 GAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGAC 41809 | | || |||||||||| ||| || ||| |||| | || |||||| | | Sbjct 9021 GGATGCCCTCCTTGTCCTGGATCTTGGCCTT----GACGTTCTCAATGGTGTCGGAGGCC 9076 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||||||||| || || || || |||||||||||||| || || ||||||||| Sbjct 9077 TCCACCTCCAGGGTGATGGTCTTGCCCGTCAGCGTCTTGACAAAGATCTGCATG 9130 Score = 145 bits (160), Expect = 7e-30 Identities = 162/214 (76%), Gaps = 8/214 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||||||||| || ||||||||| ||||| ||||| | |||||| || | || || Sbjct 9149 ACCAGATGCAGAGTCGACTCCTTCTGGATGTTGTAGTCTGCGAGGGTCCGGCCATCTTCC 9208 Query 41714 AGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATG 41773 ||||||||||| ||||| ||||| ||||| ||||||| || | || |||||||||| | Sbjct 9209 AGCTGCTTGCCCGCGAAGATCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTGG 9268 Query 41774 ATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 || || ||| |||| | || |||||| | ||||||||||| || || || Sbjct 9269 ATCTTGGCCTT----GACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGGT 9324 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || |||||||||||||| || || ||||||||| Sbjct 9325 CTTGCCCGTCAGCGTCTTGACAAAGATCTGCATG 9358 Score = 145 bits (160), Expect = 7e-30 Identities = 164/216 (76%), Gaps = 9/216 (4%) Strand=Plus/Plus Query 41654 ACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCG 41713 ||||| ||||| || ||||||||| ||||| ||||||| |||||| || | || || Sbjct 9377 ACCAGGTGCAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTCCGGCCATCTTCC 9436 Query 41714 AGCTGCTTGCCGGCGAATAT-CAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCAT 41772 | ||||||||||||||| || ||| ||||| ||||||| || | || |||||||||| Sbjct 9437 AACTGCTTGCCGGCGAAGATCCAGCCGCTGCTGGTCCGGAGGGATGCCCTCCTTGTCCTG 9496 Query 41773 GATTTTTTGCTTCAACGACG-ACACA---GTGTCGCTCGACTCCACCTCCACCGTTATCG 41828 ||| || ||| |||| | || |||||| | ||||||||||| || || | Sbjct 9497 GATCTTGGCCTT----GACGTTCTCAATGGTGTCGGAGGCCTCCACCTCCAGGGTGATGG 9552 Query 41829 TTTTACCCGTCAGCGTCTTTACGAAAATCTGCATGT 41864 | || |||||||||||||| ||||| |||||||||| Sbjct 9553 TCTTGCCCGTCAGCGTCTTCACGAAGATCTGCATGT 9588 >seq339 Length=724323 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || ||| || ||||| ||||| |||||||| Sbjct 491747 GCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 491688 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || | ||||||||| ||||| ||||| ||||| ||||| | || Sbjct 491687 CAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGG 491628 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || ||||||||| ||| ||| ||| | | | ||||| || | |||||| Sbjct 491627 AATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCAC 491568 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || |||||||| ||||| ||||| ||||||||| Sbjct 491567 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491519 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || ||| || ||||| ||||| |||||||| Sbjct 491975 GCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 491916 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || | ||||||||| ||||| ||||| ||||| ||||| | || Sbjct 491915 CAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGG 491856 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || ||||||||| ||| ||| ||| | | | ||||| || | |||||| Sbjct 491855 AATGCCTTCCTTGTCCTGGATCTTTGCCTTGACATTCTCGATGGTGTCACTTGGCTCCAC 491796 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || |||||||| ||||| ||||| ||||||||| Sbjct 491795 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491747 Score = 143 bits (158), Expect = 2e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || || ||||| | ||||| || || ||| || ||||| ||||| |||||||| Sbjct 492203 GCCACCACGGAGACGCAGGACCAGGTGGAGGGTGGATTCTTTCTGGATGTTGTAGTCGGA 492144 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||||| | || || | ||||||||| ||||| ||||| ||||| ||||| | || Sbjct 492143 CAGCGTGCGGCCATCTTCCAACTGCTTGCCCGCGAAGATCAGTCGCTGCTGGTCGGGAGG 492084 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 || || ||||||||| ||| ||| ||| | | | ||||| || | |||||| Sbjct 492083 AATGCCTTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCGATGGTGTCACTTGGCTCCAC 492024 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 ||||| || || || || |||||||| ||||| ||||| ||||||||| Sbjct 492023 CTCCAGGGTGATGGTCTTGCCCGTCAGGGTCTTCACGAAGATCTGCATG 491975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462159501106000