Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= AC_000011.1 Length=36519 Score E Sequences producing significant alignments: (Bits) Value seq416950 342 1e-89 >seq416950 Length=5269 Score = 342 bits (378), Expect = 1e-89 Identities = 1236/1916 (65%), Gaps = 72/1916 (4%) Strand=Plus/Plus Query 5541 GGGTCAAAAACCAGTTTCCCGCCGTTCTTTTTGATGCGTTTCTTACCTTTGGTCTCCATG 5600 || |||||||| || ||||| || || || || ||||| | |||||| | ||||||| Sbjct 821 GGATCAAAAACTAGCTTCCCTCCATTTTTCTTAATGCGGTGTTTACCTCTTTGCTCCATG 880 Query 5601 AGCTCGTGTCCCCGCTGGGTGACAAAGAGGCTGTCCGTGTCCCCGTAGACCGACTTTATG 5660 ||| ||| ||| | ||| ||||| | |||||| |||||||||||||| || ||||| Sbjct 881 AGCCGGTGCCCCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCGTAGACAGATTTTATA 940 Query 5661 GGCCGGTCCTCGAGCGGTGTGCCGCGGTCCTCCTCGTAGAGGAACCCCGCCCACTCCGAG 5720 | | | || || | || | ||| || |||| | || | |||||||| || Sbjct 941 GTTTTTTGATGTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAATTCTGCCCACTCAGAC 1000 Query 5721 ACGAAAGCCCGGGTCCAGGCCAGCACGAAGGAGGCCACGTGGGACGGGTAGCGGTCGTTG 5780 || || | | |||||||||| || || || || | |||||| | ||| | || ||| Sbjct 1001 ACAAATACTCTAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAAGCGTACCTGTTGTTT 1060 Query 5781 TCCACCAGCGGGTCCACCTTTTCCAGGGTATGCAAACACATGTCCCCCTCGTCCACATCC 5840 || | | || ||||| | || || || || ||||| | || || || Sbjct 1061 TCTATTAAAGGAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCATCATCTTCAGTTTCT 1120 Query 5841 AGGAAGGTGATTGGCTTGTAAGTGTAGGCCACGTGACCGGGGGTCCCGGCCgggggggTA 5900 | || ||||||||||| || | || | |||||||| | ||||| Sbjct 1121 AAAAACGTGATTGGCTTATACTTATATGTCACGTGACTATCTTT-----------GGGTA 1169 Query 5901 TAAAA-GGGTGCGGGTCCCTGC-TCGTCCTCACTGTCTTCCGGATCGCTGTCCAGGAGCG 5958 ||||| ||||| | | || | | || ||||| || || ||| ||| || Sbjct 1170 TAAAAAGGGTGTG---CTCTTCGTTTTCATCACTTTCATCTAACTCGG----CAGAAGGT 1222 Query 5959 CCAGCTGTTGGGGTAGGTATTCCCTCTCGAAGGCGGGCATGACCTCGGCACTCAGGTTGT 6018 ||| || |||| | | || | ||||| | || ||||| | ||||| Sbjct 1223 GCAGGTG--------GGTAAGCTACGACAAATTCTGGCATAATTTCAGCACTAAAGTTGT 1274 Query 6019 CAGTTTCTAGAAACGAGGAGGATTTGATATTGACGGTGCCGGCGGAGATGCCTTTCAAGA 6078 ||||||||| || || || |||||||| | | | || || |||| ||| || Sbjct 1275 CAGTTTCTATGAATGATGAAGATTTGATGGAAAAGTTACCTCTGGCGATGGTTTTT--GA 1332 Query 6079 GCCCCTCG--TCCATCTGGTCAGAAAAGACGATCTTTTTGTTGTCGAGCTTGGTGGCGAA 6136 | || | || | ||||| ||||| || || ||||||||||| | || ||||| || Sbjct 1333 CGCGCTGGCTTCTAGTTGGTCTGAAAACACAATTTTTTTGTTGTCCAATTTAGTGGCAAA 1392 Query 6137 GGAGCCGTAGAGGGCGTTGGAGAGGAGCTTGGCGATGGAGCGCATGGTCTGGtttttttC 6196 | ||| || | ||||||||| || ||||| || ||| |||||||| ||||| ||||| Sbjct 1393 GCTGCCATATAAGGCGTTGGAAAGTAGCTTAGCTATGCTTCGCATGGTTTGGTTCTTTTC 1452 Query 6197 CTTGTCGGCGCGCTCCTTGGCGGCGATGTTGAGCTGCACGTACTCGCGCGCCACGCACTT 6256 ||||| || || ||||| ||||||| ||||||||||| || ||||||||||| Sbjct 1453 TTTGTCTGCTTTTTCTTTGGCTCCGATGTTTAGCTGCACGTATTCTTTGGCCACGCACTT 1512 Query 6257 CCATTCGGGGAAGACGGTGGTCAGCTCGTCGGGCACGATTCTGACCTGCCAGCCCCGATT 6316 ||| || ||||||| ||| || ||||| || | || | || ||| || | || Sbjct 1513 CCACTCTGGGAAGATGGTTGTTCTTTCGTCTGGAAGAATGCGCACTGCCCATCCTCTGTT 1572 Query 6317 ATGCAGGGTGATGAGGTCCACACTGGTGGCCACCTCGCCGCGCAGGGGCTCATTAGTCCA 6376 |||| || || | ||| | | || || || || || |||| ||||| |||||||| Sbjct 1573 GTGCAAAGTAATCAAGTCTATAGAAGTAGCTACTTCTCCTCGCAAAGGCTCGTTAGTCCA 1632 Query 6377 GCAGAGGCGTCCGCCCTTGCGCGAGCAGAAggggggcagggggTCCAGCATGACCTCGTC 6436 ||| || | |||||| || | ||||| || || ||||| || || | | |||||| Sbjct 1633 GCACAGCCTTCCGCCTTTTCTGGAGCAAAACGGAGGCAGTTCATCAAGAAACAACTCGTC 1692 Query 6437 gggggggTCGGCATCGATGGTGAAGATGCCGGGCAGGAGGTCGGGGTCAAAGTAGCTGAT 6496 || || || || ||||||||||| ||||| || || || |||||| ||| | | Sbjct 1693 TGGAGGATCCGCGTCGATGGTGAAAATGCCTGGAAGAAGACACTCGTCAAAATAG-TCAA 1751 Query 6497 GGAAGTGGCCAGATCGTCCAGGGCAGCTT-----GCCATTCGCGCACGGCCAGCGCGCGC 6551 || | | | || ||||| |||||| | | || | || | Sbjct 1752 TTTTTTGCTCTAAGTTTTCA----AGCTTTCTGATCCATTCTGTCGCAGCTAAGGCTCTT 1807 Query 6552 TCGTAGGGACTGAGGGGCGTGCCC-CAGGGCATGGGATGGGTAAGCGCGGAGGCGTACAT 6610 || || ||| | | ||| ||||| | ||| | ||||| || || || ||| ||||| Sbjct 1808 TCATACGGATTTAAAGGC-TGCCCGCTGGGAAAAGGATGCGTTAGAGCACTGGCATACAT 1866 Query 6611 GCCGCAGATGTCGTAGACGTAGAGGGGCTCCTCGAGGATGCCGATGTAGGTGGGGTAGCA 6670 |||||||||||| || || || | |||| || | |||||| || || ||||| ||||| Sbjct 1867 GCCGCAGATGTCATACACATAAATTGGCTGTTCCATGATGCCAATATAAGTGGGATAGCA 1926 Query 6671 GCGCCCCCCGCGGATGCTGGCGCGCACGTAGTCATACAGCTCGTGCGAGGGGGCGAGGAG 6730 ||| || || |||||||| ||| ||||||||||||| || || || || || | | Sbjct 1927 GCGACCACCACGGATGCTCTGGCGGACGTAGTCATACATTTCATGAGATGGTGCTAATAA 1986 Query 6731 CCCCGGGCCCAGGTTGGTGCGACTGGGCTTTTCGGCGCGGTAGACGATCTGGCGGAAAAT 6790 | | | | ||| | | | ||| | | | | ||| | || || ||||| Sbjct 1987 AACGTTGTCTAAGTTTGCTTTATTTGGCCTAACTTCTCTGTATAATATTTGCTTAAAAAT 2046 Query 6791 GGCATGCGAGTTGGAGGAGATGGTGGGCCTTTGGAAGATGTTGAAGTGGGCGT-GGGGCA 6849 ||||| ||||| ||| || ||||| ||||| || ||||| || || | || | Sbjct 2047 TGCATGAGAGTTAGAGCTAATAGTGGGTCTTTGAAAAATGTTAAATGAAGCATCAGGTAA 2106 Query 6850 GTCCGACCGAGTCGCGGATGAAGTGGGCGTAGGAGTCTTGCAGCTTGGCGACGAGCTCGG 6909 || | ||| || || |||| ||| || ||||| || ||| || || | | Sbjct 2107 GTTCACTTGAGAAGC-AATAAAGTTTTTGTAAGATTCTTGGAGTTTGTTTACTAGGGCCG 2165 Query 6910 CGGTGACTAGGACGTCCAGAGCGCAGTAGTCGAGGGTCTCCTGGATGATGTCATACTTGA 6969 || |||| ||||| | | || |||| || || | |||||| ||||| || | Sbjct 2166 ATGTCACTAACACGTCTTGCACACAATAGTGCAGCGTTTGCTGGATTATGTCGTA----A 2221 Query 6970 GCTGTCCC----TTTTGTTTCCACAGCTCGCGGTTGAGAAGGAACTCTTCGCGGTCCTTC 7025 || | | |||| | ||||||| | |||||| | ||||||||| | ||| Sbjct 2222 GCCCCCACGTTTTTTTCTCTCCACAGAGCCTTGTTGAGTTGATACTCTTCGCTGGATTTC 2281 Query 7026 CAGTACTCTTCGAGG---GGGAACCCGTCCTGATCTGCACGGTAAGAGCCTAGCATGTAG 7082 ||||| |||| ||| || || || |||| |||| ||||||| |||| | ||| Sbjct 2282 CAGTA-TCTT--AGGCTTGGAAAGCCATCCTCATCTTGTTGGTAAGACCCTATTCTATAG 2338 Query 7083 AACTGGTTGACGGCCTTGTAGGCGCAGCAGCCCTTCTCCACGGGGAGGGCGTAGGCCTGG 7142 || | || || || | ||| | |||| || || || || || || |||| ||| Sbjct 2339 AATTCATTTACTGCTTCGTACGGACAGCTTCCTTTTTCTACAGGCAGCTCGTAAGCCCCA 2398 Query 7143 GCGGCCTTGCGCAGGGAGGTGTGCGTGAGGGCGAAAGTGTCCCTGACCATGACCTTGAGG 7202 || || || | | | ||||| || || || |||||||| || ||||| | || | Sbjct 2399 GCAGCATTTCTTAAGCTAGTGTGGGTCAGCGCAAAAGTGTCTCTTACCATAAATTTAACA 2458 Query 7203 AACTGGTGCTTGAAGTCGATATCGTCGC----AGC-CCCCCTGCTCCCAGAGCTG-GAAG 7256 ||||||| |||| ||| || || ||| || |||||| | | | ||| Sbjct 2459 AACTGGTACTTGTGGTC-----CGCGGCTGTGAGCTTTCCACACTCCCA-ATCGGCGAAA 2512 Query 7257 TCCGTGCGCTTCTTGTAGGCGGGGTTGGGCAAAGCGAAAGTAACATCGTTGAAGAGGATC 7316 || | || || | ||| || || || || |||| || || ||||| || || Sbjct 2513 TCTTTTCGTTTTTCGTACTTTGGATTAGGTAAGCAAAAAGAAATGTCATTGAACAGTATT 2572 Query 7317 TTGCCCGCGCGGGGCATAAAGTTGCGAGTGATGCGGAAAGGTTGGGGCACCTCGGCCCGG 7376 || || | |||||||| || | | | || ||||| | | || || | | | Sbjct 2573 TTACCGTTTCTTGGCATAAAATTTCTATTTATTTTGAAAGCAGGCAGAACATCCGTTCTG 2632 Query 7377 TTGTTGATGACCTGGGCGGCGAGCACGATCTCGTCGAAGCCGTTGATGTTGTGGCC 7432 |||| ||||| || ||||| | ||||||||| || || ||| |||||||||||| Sbjct 2633 TTGTGTATGACTTGCGCGGCCAACACGATCTCATCAAAACCGCAGATGTTGTGGCC 2688 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 102524728202790