Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= AC_000189.1 Length=34094 Score E Sequences producing significant alignments: (Bits) Value seq416950 289 5e-74 seq1393656 113 9e-21 >seq416950 Length=5269 Score = 289 bits (320), Expect = 5e-74 Identities = 834/1272 (66%), Gaps = 30/1272 (2%) Strand=Plus/Plus Query 6122 CAGGTGGGTACGCTACGACAAAGTCCGGGGTGACCTCAGCGCTGAGGTTGTCTGTTTCTA 6181 |||||||||| ||||||||||| || || | | ||||| || | |||||| ||||||| Sbjct 1224 CAGGTGGGTAAGCTACGACAAATTCTGGCATAATTTCAGCACTAAAGTTGTCAGTTTCTA 1283 Query 6182 TGAAGGCGGAGGAGCGGACGGAGAGGTCGCCGCGGGCGATGGCTTCGGTGGTGCGGGCGT 6241 |||| | || || || ||| | || || | |||||||| || | | || ||| | Sbjct 1284 TGAATGATGAAGATTTGATGGAAAAGTTACCTCTGGCGATGGTTTTTGACGCGCTGGCTT 1343 Query 6242 CCATCTGGCTGGCGAAGACCACCTTCTTATTGTCGAGGCGTGTGGCGAAACTGCCGTAGA 6301 | | ||| | || || | || || ||||| | ||||| || ||||| || | Sbjct 1344 CTAGTTGGTCTGAAAACACAATTTTTTTGTTGTCCAATTTAGTGGCAAAGCTGCCATATA 1403 Query 6302 GGGCGTTGGAGAGAAGCTTGGCGATGCTGCGGAGCGTTTGGTTTCTGTCCCGGTCGGCCT 6361 ||||||||| || ||||| || ||||| || | |||||||| | || ||| || | Sbjct 1404 AGGCGTTGGAAAGTAGCTTAGCTATGCTTCGCATGGTTTGGTTCTTTTCTTTGTCTGCTT 1463 Query 6362 TTTCCTTGGCAGCGATGTTGAGCTGCACGTAGTCTCGGGCGAGGCAGCGCCACTCGGGGA 6421 |||| ||||| ||||||| ||||||||||| ||| ||| | ||| |||||| |||| Sbjct 1464 TTTCTTTGGCTCCGATGTTTAGCTGCACGTATTCTTTGGCCACGCACTTCCACTCTGGGA 1523 Query 6422 AGATGCTGTTGCGCTCGTCCGGCAGGAGGCGCACGGCCCAGCCACGGTTGTGGAGGGTGA 6481 ||||| | | | ||||| || || | |||||| ||||| || | |||||| | || | Sbjct 1524 AGATGGTTGTTCTTTCGTCTGGAAGAATGCGCACTGCCCATCCTCTGTTGTGCAAAGTAA 1583 Query 6482 CCACGTCCACGGAGGTGGCTACCTCGCCGCGGAGGGGCTCGTTGGTCCAGCAGAGGCGGC 6541 || ||| | || || ||||| || || || | |||||||| |||||||| || | | Sbjct 1584 TCAAGTCTATAGAAGTAGCTACTTCTCCTCGCAAAGGCTCGTTAGTCCAGCACAGCCTTC 1643 Query 6542 CGCCCTTGCGGGAGCAGTAGGGGGGCAGGACGTCCAGCTGGTCCTCGTCgggggggTCGG 6601 |||| || | |||||| | || ||||| | || || |||||| || || || | Sbjct 1644 CGCCTTTTCTGGAGCAAAACGGAGGCAGTTCATCAAGAAACAACTCGTCTGGAGGATCCG 1703 Query 6602 CGTCGATGGTGAAGAGGGCGGGCAGGAGGTCGGGGTCGAAGTAG---CTGAGGGGCTCGG 6658 ||||||||||||| | | | || || || ||| || ||| | |||| Sbjct 1704 CGTCGATGGTGAAAATGCCTGGAAGAAGACACTCGTCAAAATAGTCAATTTTTTGCTCTA 1763 Query 6659 GGCCGTCGAGGCGGTCCTG--CCAGCGGCGGGCGGCCAGGGCGCGGTCGAAGNNNNNNNN 6716 | || || | ||| ||| || || | ||| | || | Sbjct 1764 AGTTTTCAAG--CTTTCTGATCCATTCTGTCGCAGCTAAGGCTCTTTCATACGGATTTAA 1821 Query 6717 NNNTTGGCCGGCGGGGAAGGGGTGGGTGAGGGCGCTGGCATACATGCCGCAGATGTCATA 6776 || ||| ||| || || || || || || |||||||||||||||||||||||||| Sbjct 1822 AGGCTGCCCGCTGGGAAAAGGATGCGTTAGAGCACTGGCATACATGCCGCAGATGTCATA 1881 Query 6777 GACGTAGAGGGGCTCCCGCAGGAGGCCGATGAAGTTGGGGTAGCAGCGGCCGCCGCGCAG 6836 || || | |||| || || ||| || | |||| |||||||| || || || | Sbjct 1882 CACATAAATTGGCTGTTCCATGATGCCAATATAAGTGGGATAGCAGCGACCACCACGGAT 1941 Query 6837 GCTCTTCGCGGACGTAGTCATACAGCTCGTGGGAGGGCGC---GAGGAGGTTCGGCCGAG 6893 |||| | ||||||||||||||||| || || || || || | | ||| | | | Sbjct 1942 GCTC-TGGCGGACGTAGTCATACATTTCATGAGATGGTGCTAATAAAACGTT--GTCTAA 1998 Query 6894 GTGCGGCGCCTGGGGCCGGCTGGCGCGGTAGAGGAGCTGCTTGAAGATGGCGTGGGAGTT 6953 || | | |||| | | ||| | | ||||| || || || || ||||| Sbjct 1999 GTTTGCTTTATTTGGCCTAACTTCTCTGTATAATATTTGCTTAAAAATTGCATGAGAGTT 2058 Query 6954 GGAGCTGATGGTGGGCCTCTGGAAGACATTGAAGGCGGCGTGGGGAAGGCCGGCCTGCGT 7013 ||||| || ||||| || || || | || || | || | || | | | || | Sbjct 2059 AGAGCTAATAGTGGGTCTTTGAAAAATGTTAAATGAAGCATCAGGTAAGTTCACTTGAGA 2118 Query 7014 GTGGACGAAGGCGCGGTAGGACTCTTGCAGCTTGCGGACCAGACGGGCG--GTGACGACG 7071 | ||| ||| || ||||| || ||| || || || || || || | Sbjct 2119 AGCAATAAAGTTTTTGTAAGATTCTTGGAGTTTGTTTACTAG--GGCCGATGTCACTAAC 2176 Query 7072 ACGTCCTGGGCGCAGTAGCGCAGGGTGGCCTGGACGATGTCGTAAGCGTCCCCCTGGCTC 7131 ||||| || | || ||| |||| || ||||| ||||||||||| |||| | | Sbjct 2177 ACGTCTTGCACACAATAGTGCAGCGTTTGCTGGATTATGTCGTAAGC--CCCCACG--TT 2232 Query 7132 TCCTTCT-TCCACAGGTCCTTGTTGAGGAGGTACTCCTGATCGCTG---TCCCAGTA-CT 7186 | |||| ||||||| |||||||||| | ||||| |||||| | |||||| || Sbjct 2233 TTTTTCTCTCCACAGAGCCTTGTTGAGTTGATACTC---TTCGCTGGATTTCCAGTATCT 2289 Query 7187 TGGCGTGTGGGAAGCCGTCCTGATCGCGTAAGTAGTCCCCCGTGCGGTAGAACTCGTTCA 7246 | | | ||| ||||| |||| ||| || ||| ||| | | ||||| || || | Sbjct 2290 TAG-GCTTGGAAAGCCATCCTCATCTTGTTGGTAAGACCCTATTCTATAGAATTCATTTA 2348 Query 7247 CGGCATCGTAGGGGCAGTGTCCCTTGTCCACGGCCAGCTCGTAGGCCGCGGCGGCCTTGC 7306 | || ||||| || ||| ||| || || || | ||||||||| ||| | || || || | Sbjct 2349 CTGCTTCGTACGGACAGCTTCCTTTTTCTACAGGCAGCTCGTAAGCCCCAGCAGCATTTC 2408 Query 7307 GGAGGCTGGTGTGCGTGAGGGCGAAGGTGTCCCGGACCATGAACTTGACGTACTGGTGCT 7366 | ||| ||||| || || || || ||||| | ||||| || || || |||||| || Sbjct 2409 TTAAGCTAGTGTGGGTCAGCGCAAAAGTGTCTCTTACCATAAATTTAACAAACTGGTACT 2468 Query 7367 GGGGGTCCTCGG 7378 | ||||| ||| Sbjct 2469 TGTGGTCCGCGG 2480 Score = 109 bits (120), Expect = 1e-19 Identities = 385/590 (65%), Gaps = 15/590 (3%) Strand=Plus/Plus Query 9456 CGCATGGTCTCGGTGACGGCGCGGCCGCCCTCCCGGGGCCGCAGCTCGAAGGCGCCCCCG 9515 |||||| | || || || || | | || || || |||||||| || || || || Sbjct 4435 CGCATGCTTTCTGTCACTGCTCTGTTTCCTTCGCGCGGCCGCAGTGTAAAAGCTCCTCCC 4494 Query 9516 CGCAGCGCGGTGCCGCTGCAGAGGGGCAGGCTGAGCGCACTGATGATGCAGCGTGTCAAC 9575 | || ||||| || |||| |||| || || ||||| |||||||| ||| ||| Sbjct 4495 CTCAAGGCGGTTCCAGCGCAGTTTGGCAAACTTAGGGCACTAATGATGCATTTTGTTAAC 4554 Query 9576 TCTCT-CGTAGGTACCTCCTGCTGTTGCAGCGCTTCGGCAAACTCGCGCACCTGCTCTTC 9634 ||| ||||||||| | ||| | | || |||||| | | ||| | |||| || Sbjct 4555 G-TCTGCGTAGGTACTTGCTGAAGACGAAGAGCTTCGTCTATCTCAGCCGCCTGATC--- 4610 Query 9635 GGACCCGGCGAAGCGTTCGACGAAGGCGTCTAGCCAGCAACAGTCGCAAGGTAAGTTGAG 9694 | | | ||||| || | || || |||||||| | ||||| ||||||||| |||| Sbjct 4611 GCTCTCTGCGAACTTTTGAATAAACGCATCTAGCCAAAAGCAGTCACAAGGTAAGCTGAG 4670 Query 9695 CGCGGTGTGCGTCGGG--AGCCGGAGGTGCC--GGCTGACGAGGAAGTGAAAGTAGGCCG 9750 | ||| | | ||| || ||||||| | | || ||||||| |||||| || | Sbjct 4671 TTCT-TGTTC-TGGGGCTAGAGGGAGGTGTTTAGCCAGA--AGGAAGTTAAAGTAAGCAG 4726 Query 9751 TCTTGAGCTGCCGGATGGCGCGCAGGAGGGTGAGGTCTTTGCGGCCGGCGCGCTGCAGGC 9810 | || || | | || | | ||| | | |||||||||||| ||| || | | Sbjct 4727 TTTTAAGTTTGCTAATAGTGGTCAGAATAACCAAGTCTTTGCGGCCCGCGTTTTGGACCC 4786 Query 9811 GGATGCGGTCGGCCATGCCCCAGGCCTCCTGCTGGCAGCGGCCGATGTCCTTGAGCTGCT 9870 |||||||| || | ||||| || || ||||| ||| ||||| || |||| Sbjct 4787 TTATGCGGTCAGCTAGCCCCCAAGCACGCTCTTGGCATGCGCCTATGTCTTTAGATTGCT 4846 Query 9871 CCTGCAGCAGATGTGCCACGGGCACGTCCCGGTCGGCGTCCAGGTGGGTGCGACCGTAGC 9930 | |||| || | | || |||||||| |||| ||||| | || || || || ||| Sbjct 4847 CTTGCAACAAGTACTCTACTGGCACGTCATGGTCAGCGTCTAAGTTAGTCCGCCCAAAGC 4906 Query 9931 CCCGCAGGGGGCGCAGCAGCGCCAGGTCGGCCACCACGCGCTCGGCCAGGATGGCCTGCT 9990 | |||| || | | || ||||| || ||||| | | ||| || | || || |||| Sbjct 4907 CACGCATCGGCCTGATTAGGGCCAGATCTGCCACAATCCTCTCTGCTAAAATAGCTTGCT 4966 Query 9991 GCATGCGCTG-CAGGGAGTCTGAGAAGTCATCCAGGTCCAGGAACCGGTG 10039 | || | || || | |||||| |||| |||| ||| | |||| ||| Sbjct 4967 GGAT-AGATGTGAGTGTGTCTGAAAAGTTGTCCATGTCTATAAACCTGTG 5015 Score = 105 bits (116), Expect = 1e-18 Identities = 133/183 (73%), Gaps = 0/183 (0%) Strand=Plus/Plus Query 8639 GATGACGCGGCGGTTGATGTTCTGGATCTGCGGGTTCCCGGAGAAGACCACGGGCCCGGT 8698 ||| || | ||||||||||||||| |||| | | ||||| || ||||| || ||||| Sbjct 3681 GATAACTCTGCGGTTGATGTTCTGAATCTCCCGCAGGCCGGAAAATACCACTGGGCCGGT 3740 Query 8699 GACTCGGAACCTGAAAGAGAGTTCCACGGAATCAATGTCGGCATCGTGGGTGGCCACCTG 8758 |||| |||||||||||| | ||||| || |||||||| || || | ||||| || Sbjct 3741 CACTCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTG 3800 Query 8759 GCGCAGGATCTCGGACACGTCCCCGCTGTTTTCGCGGTAGGCGATGTCCTGCATGAACTG 8818 | ||||| |||||| |||||||| ||| | || || || || ||| ||||| Sbjct 3801 CTTTAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTG 3860 Query 8819 CTC 8821 ||| Sbjct 3861 CTC 3863 >seq1393656 Length=1543 Score = 113 bits (124), Expect = 9e-21 Identities = 386/590 (65%), Gaps = 15/590 (3%) Strand=Plus/Plus Query 9456 CGCATGGTCTCGGTGACGGCGCGGCCGCCCTCCCGGGGCCGCAGCTCGAAGGCGCCCCCG 9515 |||||| | || || || || | | || || || |||||||| || || || || Sbjct 743 CGCATGCTTTCTGTCACTGCTCTGTTTCCTTCGCGCGGCCGCAGTGTAAAAGCTCCTCCC 802 Query 9516 CGCAGCGCGGTGCCGCTGCAGAGGGGCAGGCTGAGCGCACTGATGATGCAGCGTGTCAAC 9575 | || ||||| || |||| |||| || || ||||| |||||||| ||| ||| Sbjct 803 CTCAAGGCGGTTCCAGCGCAGTTTGGCAAACTTAGGGCACTAATGATGCATTTTGTTAAC 862 Query 9576 TCTCT-CGTAGGTACCTCCTGCTGTTGCAGCGCTTCGGCAAACTCGCGCACCTGCTCTTC 9634 ||| ||||||||| | ||| | | || |||||| | | ||| | |||| || Sbjct 863 G-TCTGCGTAGGTACTTGCTGAAGACGAAGAGCTTCGTCTATCTCAGCCGCCTGATC--- 918 Query 9635 GGACCCGGCGAAGCGTTCGACGAAGGCGTCTAGCCAGCAACAGTCGCAAGGTAAGTTGAG 9694 | | | ||||| || | || || |||||||| | ||||| ||||||||| |||| Sbjct 919 GCTCTCTGCGAACTTTTGAATAAACGCATCTAGCCAAAAGCAGTCACAAGGTAAGCTGAG 978 Query 9695 CGCGGTGTGCGTCGGG--AGCCGGAGGTGCC--GGCTGACGAGGAAGTGAAAGTAGGCCG 9750 | ||| | | ||| || ||||||| | | || ||||||| |||||| || | Sbjct 979 TTCT-TGTTC-TGGGGCTAGAGGGAGGTGTTTAGCCAGA--AGGAAGTTAAAGTAAGCAG 1034 Query 9751 TCTTGAGCTGCCGGATGGCGCGCAGGAGGGTGAGGTCTTTGCGGCCGGCGCGCTGCAGGC 9810 | || || | || || | | ||| | | |||||||||||| ||| || | | Sbjct 1035 TTTTAAGTTTGCGAATAGTGGTCAGAATAACCAAGTCTTTGCGGCCCGCGTTTTGGACCC 1094 Query 9811 GGATGCGGTCGGCCATGCCCCAGGCCTCCTGCTGGCAGCGGCCGATGTCCTTGAGCTGCT 9870 |||||||| || | ||||| || || ||||| ||| ||||| || |||| Sbjct 1095 TTATGCGGTCAGCTAGCCCCCAAGCACGCTCTTGGCATGCGCCTATGTCTTTAGATTGCT 1154 Query 9871 CCTGCAGCAGATGTGCCACGGGCACGTCCCGGTCGGCGTCCAGGTGGGTGCGACCGTAGC 9930 | |||| || | | || |||||||| |||| ||||| | || || || || ||| Sbjct 1155 CTTGCAACAAGTACTCTACTGGCACGTCATGGTCAGCGTCTAAGTTAGTCCGCCCAAAGC 1214 Query 9931 CCCGCAGGGGGCGCAGCAGCGCCAGGTCGGCCACCACGCGCTCGGCCAGGATGGCCTGCT 9990 | |||| || | | || ||||| || ||||| | | ||| || | || || |||| Sbjct 1215 CACGCATCGGCCTGATTAGGGCCAGATCTGCCACAATCCTCTCTGCTAAAATAGCTTGCT 1274 Query 9991 GCATGCGCTG-CAGGGAGTCTGAGAAGTCATCCAGGTCCAGGAACCGGTG 10039 | || | || || | |||||| |||| |||| ||| | |||| ||| Sbjct 1275 GGAT-AGATGTGAGTGTGTCTGAAAAGTTGTCCATGTCTATAAACCTGTG 1323 Score = 96.9 bits (106), Expect = 7e-16 Identities = 124/171 (73%), Gaps = 0/171 (0%) Strand=Plus/Plus Query 8651 GTTGATGTTCTGGATCTGCGGGTTCCCGGAGAAGACCACGGGCCCGGTGACTCGGAACCT 8710 |||||||||||| |||| | | ||||| || ||||| || ||||| |||| |||||| Sbjct 1 GTTGATGTTCTGAATCTCCCGCAGGCCGGAAAATACCACTGGGCCGGTCACTCTGAACCT 60 Query 8711 GAAAGAGAGTTCCACGGAATCAATGTCGGCATCGTGGGTGGCCACCTGGCGCAGGATCTC 8770 |||||| | ||||| || |||||||| || || | ||||| || | ||||| Sbjct 61 GAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCTTTAAAATCTC 120 Query 8771 GGACACGTCCCCGCTGTTTTCGCGGTAGGCGATGTCCTGCATGAACTGCTC 8821 |||||| |||||||| ||| | || || || || ||| |||||||| Sbjct 121 ACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCTC 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95709606197040