Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_000942.1 Length=30944 Score E Sequences producing significant alignments: (Bits) Value seq416950 167 4e-37 >seq416950 Length=5269 Score = 167 bits (184), Expect = 4e-37 Identities = 341/504 (68%), Gaps = 6/504 (1%) Strand=Plus/Plus Query 4655 GCATGACCCTTGGCCCGGAGTTTTCCAGCTCCTTCTTGACCACAGGTTGGGCACACTAAT 4714 ||||||||||| ||||| ||||| || || | || |||||| | || || Sbjct 644 GCATGACCCTTCGCCCGCAGTTTACCTTTACCCACATGCCCACAGCAAGTACAAACAGTG 703 Query 4715 TTCTGTAAGGCGTAGAGTTTTGGAGCAAGAAAAACCGTTCGGGGACTAAATGCATCGCTC 4774 || | ||| || || ||||| ||||| ||||| || | | | |||||| ||||| | Sbjct 704 TTTTTTAAAGCATACAGTTTAGGAGCGAGAAAGACAGATTCAGAACTAAAAGCATCAGAC 763 Query 4775 CCGCAGTATTTACACTGAGTTTCACATTCCACTAGCCATGTAAGACTCGGCTTTTCAGGG 4834 || | || ||||||||| |||||||| || | |||||||| | || |||| || Sbjct 764 TTACATTTTTCACACTGAGTCTCACATTCAACCAACCATGTAATAGATGGGTTTTTTGGA 823 Query 4835 TTAAAAACGAGCTTACCTCCGTTCTTCTTAAGACGGTGTTTTCCCCGGGATTCCATGAGG 4894 | |||||| ||||| ||||| || ||||||| |||||||| || | |||||||| Sbjct 824 TCAAAAACTAGCTTCCCTCCATTTTTCTTAATGCGGTGTTTACCTCTTTGCTCCATGAGC 883 Query 4895 TTTCGCCCCGCTTCGGTGACAAACAGGCTATCAGTGTCACCGTACACACTTTTTATAAGT 4954 ||||| ||||||| ||||||| ||| |||||||| ||||| ||| |||||| ||| Sbjct 884 CGGTGCCCCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCGTAGACAGATTTTAT-AGT 942 Query 4955 CGTTTTTCA---AGTTGAAGACCTCGGTCACTTTCGTAGAGTATGTCACTCCACTCACTC 5011 ||||| | ||| | |||| ||| |||| | | || ||||||| | Sbjct 943 --TTTTTGATGTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAATTCTGCCCACTCAGAC 1000 Query 5012 ATAAACCCACGAGTCCAAGCGAGCACAAAAGAGGCAAGGTGTGAGGCGTAGCGGTCATTG 5071 | ||| | | |||||| || | ||||| || |||| ||| || ||||| | || || Sbjct 1001 ACAAATACTCTAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAAGCGTACCTGTTGTTT 1060 Query 5072 TCGACGAGTGGATTGCTGTGCTCTAGAGTGACGAGAGTCAGGTCGTCGGCTTCTGCATCA 5131 || | | ||| | ||| |||| |||| | | ||| || |||| | || Sbjct 1061 TCTATTAAAGGAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCATCATCTTCAGTTTCT 1120 Query 5132 AGAAATTTGATTGGCTTAAAATTA 5155 | ||| ||||||||||| | ||| Sbjct 1121 AAAAACGTGATTGGCTTATACTTA 1144 Score = 98.7 bits (108), Expect = 2e-16 Identities = 175/253 (69%), Gaps = 2/253 (1%) Strand=Plus/Plus Query 5882 GGATGGGTAAGTGCGGAAGCATACATGCCACAAATGTCATATACATAAATCGGTTCTTTC 5941 ||||| || || || ||||||||||| || |||||||| |||||||| || | ||| Sbjct 1841 GGATGCGTTAGAGCACTGGCATACATGCCGCAGATGTCATACACATAAATTGGCT-GTTC 1899 Query 5942 AATTCTCCCAGGA-CGGTAGGATAACATCGACCGCCGCGTATGCTTTGGCGTACAAAATC 6000 || | ||| | || ||||| || ||||| || || ||||| ||||| || | || Sbjct 1900 CATGATGCCAATATAAGTGGGATAGCAGCGACCACCACGGATGCTCTGGCGGACGTAGTC 1959 Query 6001 ATACATCTCCCTAGAAGGGGCCAGCAACACATCATCAAAGTTGGGTTTTTCCGGTCTGAG 6060 |||||| || ||| || || | || || | || ||||| | ||| | || || | Sbjct 1960 ATACATTTCATGAGATGGTGCTAATAAAACGTTGTCTAAGTTTGCTTTATTTGGCCTAAC 2019 Query 6061 TTCGGAATAAAGAGTCTGTTTAAAGATGGCGTGGGAGTTAGCGCTTATTGTAGGTCGCTG 6120 ||| || | | || ||||| || || || ||||||| ||| || || |||| || Sbjct 2020 TTCTCTGTATAATATTTGCTTAAAAATTGCATGAGAGTTAGAGCTAATAGTGGGTCTTTG 2079 Query 6121 AAAAATATTGAAT 6133 |||||| || ||| Sbjct 2080 AAAAATGTTAAAT 2092 Score = 98.7 bits (108), Expect = 2e-16 Identities = 258/391 (66%), Gaps = 2/391 (1%) Strand=Plus/Plus Query 6419 TAAAAGTCATTTACGGCCGCATAGGGGCAAACGCCTTTTTCCAGGGGCAAAGAATAGGCC 6478 || || |||||||| || | || || || |||||||| | |||| || ||| Sbjct 2336 TAGAATTCATTTACTGCTTCGTACGGACAGCTTCCTTTTTCTACAGGCAGCTCGTAAGCC 2395 Query 6479 TCGGCAGCTTTACG-AAGAGAGGTGTGGGTCAAAGCGAATGTGTCTCGCACCATGAACTT 6537 | ||||| || | ||| || ||||||||| || || ||||||| ||||| || || Sbjct 2396 CCAGCAGCATTTCTTAAGCTAG-TGTGGGTCAGCGCAAAAGTGTCTCTTACCATAAATTT 2454 Query 6538 TACATATTGAATCTTAGAGTCACTGGTCGTGAGACAGCCTTGTTCCCACTGTTCAAAGTC 6597 ||| | || ||| ||| || ||||| || ||||| | | || || Sbjct 2455 AACAAACTGGTACTTGTGGTCCGCGGCTGTGAGCTTTCCACACTCCCAATCGGCGAAATC 2514 Query 6598 TGTTCtttttttATAGCGAGGATTGGGCAGTGAAAAAGTAATGTCATTAAACAGAATACG 6657 | ||| ||||| || ||||| || | |||||| ||||||||| ||||| || Sbjct 2515 TTTTCGTTTTTCGTACTTTGGATTAGGTAAGCAAAAAGAAATGTCATTGAACAGTATTTT 2574 Query 6658 GCCATTTCGAGGCATGAAGTGACGGTGGACTCGCAGGGGAGGTGGAAAGTTCACTCTGTT 6717 || |||| ||||| || | | | | | | | ||| ||| | | |||||| Sbjct 2575 ACCGTTTCTTGGCATAAAATTTCTATTTATTTTGAAAGCAGGCAGAACATCCGTTCTGTT 2634 Query 6718 GTTTAGGACTTGAGCCGCCACTACAATTTCATCAAAACCATTAATGTTGTGACCTACTAC 6777 || || |||||| || |||| || || ||||||||||| |||||||| || | ||| Sbjct 2635 GTGTATGACTTGCGCGGCCAACACGATCTCATCAAAACCGCAGATGTTGTGGCCAATTAC 2694 Query 6778 ATAGACTTCAATAAACTTGGGAGTGtttttt 6808 ||| | ||||||||||| ||| || |||| Sbjct 2695 ATAAATTTCAATAAACTGTGGACTGCCTTTT 2725 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 87176694799495