Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq544196 100 2e-16 seq134495 91.5 1e-13 seq111374 87.8 1e-12 seq73042 86.0 5e-12 seq407441 84.2 2e-11 seq11925 84.2 2e-11 seq203 84.2 2e-11 seq808927 82.4 6e-11 >seq544196 Length=3977 Score = 100 bits (110), Expect = 2e-16 Identities = 164/234 (70%), Gaps = 2/234 (1%) Strand=Plus/Minus Query 28941 TTTATAAGTAATAG-TGTAAAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCAT 28999 ||||||| | ||| | | ||||||||||||||||| || | ||||||| || ||||| Sbjct 1389 TTTATAAATTTTAGATTTTAAAATGCAAATATTCATGAAGATGTTGACGGA-AAGACCAT 1331 Query 29000 TACCGCCGAAACGGAACCCGCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAA 29059 | || || | | || ||| | | || | ||| || ||| || || Sbjct 1330 AAATCTTGAGGTTGAGAGCTCTGATACGATTGATAATGTCAAGGCTAAGATTCAAGACAA 1271 Query 29060 AGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTC 29119 |||||| | || |||||||| || || || |||| |||||| |||||||| ||| Sbjct 1270 GGAAGGTATTCCTCCTGATCAACAGAGGCTCATTTTTGTGGGCAAGCAACTGGAGGATGG 1211 Query 29120 CAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 | ||| | |||||||| |||||||||||||||||||| |||||| | || || Sbjct 1210 CCGAACCCTAGCCGATTATAATATTCAGAAGGAATCTACCCTTCACCTTGTCTT 1157 >seq134495 Length=14222 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 || || |||||| | || |||||||| || || || ||||||||||| || ||||| Sbjct 3832 GACAAGGAAGGTATTCCTCCTGATCAACAGAGGCTCATTTTTGCGGGCAAGCAGCTGGAG 3773 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||| | ||| | |||||||| || ||||||||||||||||| |||||| | || || Sbjct 3772 GATGGCCGAACCCTCGCCGATTATAACATTCAGAAGGAATCTACCCTTCACCTTGTCTTG 3713 Query 29175 CGATTACGAGGAGGG 29189 || | || || ||| Sbjct 3712 CGTCTGCGTGGTGGG 3698 >seq111374 Length=16363 Score = 87.8 bits (96), Expect = 1e-12 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| || ||| | |||||||| || |||||||| |||||| | ||| | || || Sbjct 8011 AGATCAGCAGAGATTGATCTTTGCTGGGAAACAACTCGAAGATGGAAGGACTCTTGCAGA 7952 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCAC 29165 |||||||||||||||||||||||| || ||| Sbjct 7951 TTACAATATTCAGAAGGAATCTACCCTCCAC 7921 >seq73042 Length=21847 Score = 86.0 bits (94), Expect = 5e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 29076 GATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGAT 29135 ||||| || || || || ||||| |||||||| || || ||| | ||| | || ||| Sbjct 560 GATCAGCAGAGGCTCATTTTTGCTGGCAAACAGCTTGAGGATGGCCGAACCCTCGCAGAT 501 Query 29136 TACAATATTCAGAAGGAATCTACTCTTCACATGGT 29170 || || ||||||||||||||||||||||||||||| Sbjct 500 TATAACATTCAGAAGGAATCTACTCTTCACATGGT 466 >seq407441 Length=5406 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| || | | || ||||| || ||||| || |||||| |||| | || || Sbjct 2541 AGATCAGCAGCGCTTAATATTTGCTGGAAAACAGCTAGAAGATGGGCGAACTCTAGCAGA 2600 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| ||||||||||||||||| ||||||||| |||| || || ||| | ||||| Sbjct 2601 TTATAATATTCAGAAGGAATCAACTCTTCACTTGGTTTTGCGGTTAAGGGGAGG 2654 >seq11925 Length=47080 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/114 (76%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 29075 AGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGA 29134 |||||| || | | || ||||| || ||||| || |||||| |||| | || || Sbjct 4113 AGATCAGCAGCGCTTAATATTTGCTGGAAAACAGCTAGAAGATGGGCGAACTCTAGCAGA 4054 Query 29135 TTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||| ||||||||||||||||| ||||||||| |||| || || ||| | ||||| Sbjct 4053 TTATAATATTCAGAAGGAATCAACTCTTCACTTGGTTTTGCGGTTAAGGGGAGG 4000 >seq203 Length=115218 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 |||||| || ||| |||| || | |||||||| ||||| || ||| ||| | | Sbjct 20467 AATGCAGATCTTCGTCAAGACCCTCACGGGCAAGACCATCACTCTGGAAGTCGAAAGCTC 20526 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || | ||| |||||| || || ||||| | || || || Sbjct 20527 TGACACAATTGACAATGTCAAGGCTAAAATTCAAGACAAGGAAGGGATTCCACCCGACCA 20586 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 || || || || ||||| || ||||| || ||||| ||| | ||||||||||| Sbjct 20587 GCAGAGGCTGATATTTGCCGGAAAACAGCTCGAAGACGGACGCACTCTTGCCGATTACAA 20646 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||| ||||||||||| ||||||||| | || | || | |||||||| Sbjct 20647 TATCCAGAAGGAATCGACTCTTCACCTTGTTCTCCGTCTCAGAGGAGGG 20695 >seq808927 Length=2651 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 29077 ATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATT 29136 ||||||| || || || ||| ||||||| ||||| || ||| | ||| | ||||||| Sbjct 1117 ATCAACAGAGGCTCATTTTTACGGGCAAGCAACTAGAGGATGGCCGAACCCTCGCCGATT 1058 Query 29137 ACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 | || ||||||||||||||||| |||||| | || || || | || || ||| Sbjct 1057 ATAACATTCAGAAGGAATCTACCCTTCACCTTGTCTTGCGTCTGCGTGGTGGG 1005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 374808174575225