Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_001813.1 Length=33213 Score E Sequences producing significant alignments: (Bits) Value seq416950 127 4e-25 >seq416950 Length=5269 Score = 127 bits (140), Expect = 4e-25 Identities = 231/334 (69%), Gaps = 13/334 (4%) Strand=Plus/Plus Query 5018 TGCAAAGACAACCTTTTTGTTGTCTAGCCGTGTTGCGAAGGAGCCGTATAAGGCATTGGA 5077 || ||| |||| ||||||||||| | || || ||| ||| |||||||| ||||| Sbjct 1354 TGAAAACACAATTTTTTTGTTGTCCAATTTAGTGGCAAAGCTGCCATATAAGGCGTTGGA 1413 Query 5078 AAGTAATTTACTGATGCTTCGCTGAGTCATGTTTTTGTCTTTGTCTGCTTTCTCTTTTGC 5137 ||||| ||| ||||||||| || ||| || |||||||||||||| ||||| || Sbjct 1414 AAGTAGCTTAGCTATGCTTCGCATGGTTTGGTTCTTTTCTTTGTCTGCTTTTTCTTTGGC 1473 Query 5138 TGCTATGTTAATGCT-CACGTATTCTTTAGTGATGCATTTCCACTCCGGCCAAACAGCAT 5196 | | ||||| | ||| |||||||||||| | | ||| |||||||| || | | Sbjct 1474 TCCGATGTTTA-GCTGCACGTATTCTTTGGCCACGCACTTCCACTCTGG-------GAAG 1525 Query 5197 ATAATTGTTCAGATGT---TAAAATTTTACA-TTTCCACCCTCTATTATGGAGCGTGATC 5252 || |||||| || || | | || | ||| ||||| || || | || ||| Sbjct 1526 ATGGTTGTTCTTTCGTCTGGAAGAATGCGCACTGCCCATCCTCTGTTGTGCAAAGTAATC 1585 Query 5253 AAGTCGATGGTGGTTACCACTTCTCCTAAGAGTGGCTCGTTTGTCCAACAAAGTCTTCCG 5312 ||||| || | || | ||||||||| | |||||||| ||||| || || |||||| Sbjct 1586 AAGTCTATAGAAGTAGCTACTTCTCCTCGCAAAGGCTCGTTAGTCCAGCACAGCCTTCCG 1645 Query 5313 CTTTTGCGGGAACACAGGGGAGGTAGCACGTCAA 5346 | ||| | ||| || | ||||| || | |||| Sbjct 1646 CCTTTTCTGGAGCAAAACGGAGGCAGTTCATCAA 1679 Score = 93.3 bits (102), Expect = 8e-15 Identities = 187/272 (69%), Gaps = 13/272 (5%) Strand=Plus/Plus Query 5505 GGGTGGGTAAGAGCACTTGCATACATTCCACATATGTCATACACATAAATGGGTCCTTCA 5564 || || || |||||||| |||||||| || || ||||||||||||||||| || ||| Sbjct 1841 GGATGCGTTAGAGCACTGGCATACATGCCGCAGATGTCATACACATAAATTGGCTGTTCC 1900 Query 5565 TATACACCAAGGTAAGAGGGGTAGCACCTTCCCCCTCGGACACTTTTGCGGATGTGATCA 5624 | |||| |||| ||| ||||| | || || |||| || | ||||| || ||| Sbjct 1901 ATGATGCCAATATAAGTGGGATAGCAGCGACCACCACGGATGCTCTGGCGGACGTAGTCA 1960 Query 5625 TACATTTTTTCTGATGGAGCT-TGCAGGCCTGGT---AG-ATGCTCGGTTTGGCCTTTTT 5679 ||||||| | ||||| ||| | | | || || |||| ||||||| | Sbjct 1961 TACATTTCATGAGATGGTGCTAATAAAACGTTGTCTAAGTTTGCTTTATTTGGCC--TAA 2018 Query 5680 CCGCTCTATATAAAATCTGTTTAAAAAGAGCATGGGTGTTGCTACTGATTGTGGGCCTTT 5739 | |||| ||||| || || ||||||| ||||| | ||| || || ||||| |||| Sbjct 2019 CTTCTCTGTATAATATTTGCTTAAAAATTGCATGAGAGTTAGAGCTAATAGTGGGTCTTT 2078 Query 5740 GAAATATATGGAACTGA-----CAGGTAAGTT 5766 |||| || | || ||| |||||||||| Sbjct 2079 GAAAAATGT-TAAATGAAGCATCAGGTAAGTT 2109 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93233679398250