Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_001876.1 Length=34446 Score E Sequences producing significant alignments: (Bits) Value seq416950 354 2e-93 seq1393656 196 9e-46 >seq416950 Length=5269 Score = 354 bits (392), Expect = 2e-93 Identities = 945/1419 (67%), Gaps = 45/1419 (3%) Strand=Plus/Plus Query 5738 TGTCTTCCATTTGGTCAGAAAAGACAGTGACTCTGTTGTCTAGCTTAGTGGCAAAGCTGC 5797 || |||| | |||||| ||||| ||| | | ||||||| | |||||||||||||||| Sbjct 1338 TGGCTTCTAGTTGGTCTGAAAACACAATTTTTTTGTTGTCCAATTTAGTGGCAAAGCTGC 1397 Query 5798 CATACAGGGCATTGGACAGCAGTTTGGCAATGCTTCTGAGAGTTTGGTTTTTCTCTTTAT 5857 |||| | ||| ||||| || || || || ||||||| | |||||||| || ||||| | Sbjct 1398 CATATAAGGCGTTGGAAAGTAGCTTAGCTATGCTTCGCATGGTTTGGTTCTTTTCTTTGT 1457 Query 5858 CCGCCCTTTCCTTGGGCGCAATGTTAAGTTGCACGTAGTCTCTAGCCAGACACTCCCACT 5917 | || |||| |||| | ||||| || |||||||| ||| | |||| |||| ||||| Sbjct 1458 CTGCTTTTTCTTTGGCTCCGATGTTTAGCTGCACGTATTCTTTGGCCACGCACTTCCACT 1517 Query 5918 GGGGAAATACTGTGGTGCGGGGGTCGTTGAGAATTTGGACTCTCCAGCCGCGGTTATGAA 5977 || || | || || | ||| ||||| | ||| ||| || | ||| || | Sbjct 1518 CTGGGAAGATGGTTGTTCTTTCGTCTGGAAGAATGCGCACTGCCCATCCTCTGTTGTGCA 1577 Query 5978 GCGTGATGGCATCCAAACAAGTTACCACTTCCCCCCGTAGTGTCTCGTTGGTCCAGCAGA 6037 || || || | | |||| | ||||| || || | | |||||| |||||||| | Sbjct 1578 AAGTAATCAAGTCTATAGAAGTAGCTACTTCTCCTCGCAAAGGCTCGTTAGTCCAGCACA 1637 Query 6038 GGCGACCTCCTTTTCTGGAGCAGAAGGGCGGTATAACGTCCAAGAATGCTTCTGGG--GG 6095 | | || |||||||||||||| || || || | | || ||||| | || | || Sbjct 1638 GCCTTCCGCCTTTTCTGGAGCAAAACGGAGGCAGTTCATC-AAGAAA-CAACTCGTCTGG 1695 Query 6096 TGGGTCTGCATCAATGGTGAATATCGCGGGCAGTAGGGTGCGATCAAAATAGTCAATGGG 6155 || || || || |||||||| || | || || || |||||||||||||| Sbjct 1696 AGGATCCGCGTCGATGGTGAAAATGCCTGGAAGAAGACACTCGTCAAAATAGTCAAT--- 1752 Query 6156 TCTGTGCAACTGGGTT---AGGCGGTCTTG-CCAGTTTTTAATTGCAAGCGCTCGATCAA 6211 | | ||| || ||| | || ||| ||| | | | || | |||| ||| Sbjct 1753 TTTTTGCT-CTAAGTTTTCAAGCTTTCTGATCCATTCTGTCGCAGCTAAGGCTCTTTCAT 1811 Query 6212 AGGGGTTCAAAGGTTTTCCCGCTGGGAAA-GGATGGGTGAGGGCGCTGGCATACATGCCG 6270 | || || ||||| | |||||||||||| ||||| || || || ||||||||||||||| Sbjct 1812 ACGGATTTAAAGGCTG-CCCGCTGGGAAAAGGATGCGTTAGAGCACTGGCATACATGCCG 1870 Query 6271 CAGATGTCATACACATAGATGGCTTCTGTT--AGGACGCCTATGTAGGTAGGATAGCATC 6328 ||||||||||||||||| || | ||||| | || ||| || || || |||||||| | Sbjct 1871 CAGATGTCATACACATAAATTGG--CTGTTCCATGATGCCAATATAAGTGGGATAGCAGC 1928 Query 6329 GGCCGCCCCGAATACTTTCTCTAACGTAATCATACATTTCATTGGAAGGGGCTAGTAGAA 6388 | || || || || || | | ||||| ||||||||||||| || || |||| || || Sbjct 1929 GACCACCACGGATGCTCTGGCGGACGTAGTCATACATTTCATGAGATGGTGCTAATAAAA 1988 Query 6389 AGTTGCCCA-GAGAGCTCCTGTTGGGACGCTGGGATCGGTAGACTACCTGTCTGAAGATG 6447 |||| | | | ||| | || || | || ||| | || || | || || Sbjct 1989 CGTTGTCTAAGTTTGCTT-TATTTGGCCTAACTTCTCTGTATAATATTTGCTTAAAAATT 2047 Query 6448 GCATGGGAATTGGAGCTGATGGTGGGCCTTTGGAGGACATTGAAATTGCAG--TGGGGCA 6505 ||||| || || ||||| || ||||| ||||| | | || || || || | || | Sbjct 2048 GCATGAGAGTTAGAGCTAATAGTGGGTCTTTGAAAAATGTTAAA--TGAAGCATCAGGTA 2105 Query 6506 GCCCCACTGACGTGTGAACAAAGTCCAAATAAGATGCTTGGAGTTTTTTAACCAATTCGG 6565 |||| | || ||||| |||||| |||||||||| || || | | | Sbjct 2106 AGTTCACTTGAGAAGCAATAAAGTTTTTGTAAGATTCTTGGAGTTTGTTTACTAGGGCCG 2165 Query 6566 CCGTAACCAGCACGTCCATAGCACAGTAGTCCAAGGTGCGTTGCACAATATCATAGGCAC 6625 || || | |||||| |||| |||| || || | || | || || || || | Sbjct 2166 ATGTCACTAACACGTCTTGCACACAATAGTGCAGCGTTTGCTGGATTATGTCGTAAGCCC 2225 Query 6626 CTGAATTCTCTTGCAGCCAGAGACTCTTATTGAGAAGGTACTCCTCGTCGCTGGA---CC 6682 | || | || ||| ||| ||| ||||| | ||||| ||| ||||| || Sbjct 2226 CCACGTTTTTTTCTCTCCACAGAGCCTTGTTGAGTTGATACTCTTCG---CTGGATTTCC 2282 Query 6683 AGTAGTCCCTCTGAGGA----AAAGA-ATCTGCGTCGGTTCGGTAGGTACCTAACATGTA 6737 |||| ||| ||| |||| ||| | || | |||| | |||| | || Sbjct 2283 AGTA-----TCTTAGGCTTGGAAAGCCATCCTCATCTTGTTGGTAAGACCCTATTCTATA 2337 Query 6738 AAATTCATTTACAGCTTTGTAAGGGCAGCAGCCTTTTTCCACGGGTAAAGCGTAAGCGGC 6797 ||||||||||| |||| ||| || |||| |||||||| || || | ||||||| | Sbjct 2338 GAATTCATTTACTGCTTCGTACGGACAGCTTCCTTTTTCTACAGGCAGCTCGTAAGCCCC 2397 Query 6798 AGCTGCGTTCCTGAGACTCGTGTGCGTGAGAGCAAAGGTATCTCGGACCATGAACTTCAC 6857 ||| || || || | || ||||| || || ||||| || |||| ||||| || || || Sbjct 2398 AGCAGCATTTCTTAAGCTAGTGTGGGTCAGCGCAAAAGTGTCTCTTACCATAAATTTAAC 2457 Query 6858 AAACTGAAATTTATAGTCTGCTGAGGTGGGAGTGCCTTCCTCCCAGTCTTTGAAGTCTTT 6917 |||||| | || | ||| || | ||| | | || |||||| || ||| ||||| Sbjct 2458 AAACTGGTACTTGTGGTCCGCGGCTGTGAGCTTTCCACACTCCCAATCGGCGAAATCTTT 2517 Query 6918 TCGAGCAGCATGTGTGGGGTTAGGCAGAGC-AAAAGTTAAGTCATTGAAAAGAATCTTGC 6976 ||| | | | || ||||| | ||| ||||| | ||||||||| || || || | Sbjct 2518 TCGTTTTTCGTACTTTGGATTAGGTA-AGCAAAAAGAAATGTCATTGAACAGTATTTTAC 2576 Query 6977 CACAACGAGGCATGAAATTTCTACTGACTTTAAAAGCAGCTGGAATACCTTGTTTGTTGT 7036 | | ||||| ||||||||| | | ||| ||||||| ||| | | | |||||| Sbjct 2577 CGTTTCTTGGCATAAAATTTCTATTTATTTTGAAAGCAGGCAGAACATCCGTTCTGTTGT 2636 Query 7037 TAATGACTTGTGCGGCTAGAACAATCTCATCAAAGCCGTTTATGTTGTGCCCTACGACAT 7096 |||||||| ||||| | || ||||||||||| ||| |||||||| || | |||| Sbjct 2637 GTATGACTTGCGCGGCCAACACGATCTCATCAAAACCGCAGATGTTGTGGCCAATTACAT 2696 Query 7097 AGACTTCCAAGAAA--GTCGGTTGCCCTTTGAGTTCAAG 7133 | | || ||| ||| || | |||| |||| || ||| Sbjct 2697 A-AATTTCAATAAACTGTGGACTGCCTTTTGGCTTTAAG 2734 Score = 210 bits (232), Expect = 4e-50 Identities = 417/609 (68%), Gaps = 10/609 (2%) Strand=Plus/Plus Query 8136 ACTCTGCGGTTGATTCTCTGAATCTCCGGGTGTTGGGTGAATGCTACTGGCCCCGTCACT 8195 |||||||||||||| ||||||||||| | | || ||| | ||||| || |||||| Sbjct 3685 ACTCTGCGGTTGATGTTCTGAATCTCCCGCAGGCCGGAAAATACCACTGGGCCGGTCACT 3744 Query 8196 TTGAACCTGAAAGAGAGGTCGACAGAGTTAATAGATGCATCGTTAAGCTCCGCCTGTCTA 8255 ||||||||||||| | || | ||||| ||| ||| || |||| || | || | Sbjct 3745 CTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCTTT 3804 Query 8256 ATAATTTCTTCCACGTCACCGCTGTGGTCTCGGTAAGCAATGTCTGTCATAAACCGTTCG 8315 | ||| || |||||| ||||||| || | ||||| || |||| ||||||| | || Sbjct 3805 AAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCTCA 3864 Query 8316 ATCTCTTCCTCGTCCAGTTCTCCGCGACCAGCTCGGTGGACCGTGGCTGCCAAGTCCGTG 8375 |||||||||| || | ||||| | || |||| | || ||||| |||||||| || Sbjct 3865 ATCTCTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCAATG 3924 Query 8376 CTAATGCGTCGCATGAGCTGGGAAAAGGCATTGGTTCCC--GGTTCATTCCACACTCTGC 8433 |||||||| ||||| | ||| || | |||||| ||||||||||||||||| Sbjct 3925 CTAATGCGAGACATGATGTTACTAAAAGCCT--GTTCCCCATTTTCATTCCACACTCTGC 3982 Query 8434 TGTATATAACAGCGCCATCTTCGTCTCGGGCTCGCATGACCACCTGGCCCAAGTTTAGCT 8493 |||| | || |||||||||| || ||||| ||| || ||||| ||| || ||| Sbjct 3983 TGTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGCCAGATTAAGCA 4042 Query 8494 CCACGTGGCGAGCAAAGACGGG--GCTGAGGCGGAGGTGGTGGTGCAGATAATTGAGAGT 8551 ||| | | |||| | ||| | | | | | ||||| | | || || || || Sbjct 4043 TCACATATCTCCCAAA-AGGGGAAGAT-ACCCTAATTTGGTGATTTAAGTAGTTTAGTGT 4100 Query 8552 GGTGGCTATGTGCTCCACGATGAAGAAGTAGATGACCCATCTGCGGATGGTCGACTCGTT 8611 ||| || ||||| || | | || ||| | || ||||| | ||| || | || || Sbjct 4101 GGTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTTCATT 4160 Query 8612 AATGTTGCCCTCTCG-CTCCAGCATGTTTATGGCTTCGTAAAAGTCCACAGCGAAGTTAA 8670 |||| | ||| || ||||| | || | || ||||| | ||||| ||||||| Sbjct 4161 AATG-TCACCTAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGTTAA 4219 Query 8671 AAAACTGCTCGTTGCGGGCGGAGACTGTCAGCTCTTCTTGCAGGAGACGAATGACTTCGG 8730 ||||||||| ||| | || || || || |||||||||| | | |||||| ||| | Sbjct 4220 AAAACTGCTGGTTTCTAGCAGACACAGTGAGCTCTTCTTCTAATAAGCGAATGGTTTCTG 4279 Query 8731 CTACGGCGG 8739 | || |||| Sbjct 4280 CCACAGCGG 4288 Score = 141 bits (156), Expect = 2e-29 Identities = 262/382 (69%), Gaps = 2/382 (1%) Strand=Plus/Plus Query 5134 CACTGGGTCTCGCATTCCACAAGCCAAGTCAGCTGAGGGTTGGTGGGATCAAAGACCAGA 5193 ||||| ||||| ||||| || | ||| || | ||||| | |||||||| || || Sbjct 776 CACTGAGTCTCACATTCAACCAACCATGTAATAGATGGGTTTTTTGGATCAAAAACTAGC 835 Query 5194 GGACGGTTATTACCTTTCAGGCGGTGCTTGCCTCGGGTGTCCATGAGTTCCTTTCCCCT- 5252 | ||| || | |||||| || |||| |||||||| | | ||||| Sbjct 836 TTCCCTCCATTTTTCTTAATGCGGTGTTTACCTCTTTGCTCCATGAGC-CGGTGCCCCTC 894 Query 5253 TTGGGTGAGAAACATGCTGTCCGTGTCTCCGTAGACAAATTTGAGAATCCGGTCTTCTAG 5312 || ||| | ||||| |||||| ||||| ||||||||| |||| | | | | | ||| Sbjct 895 TTCGGTCACAAACAAGCTGTCAGTGTCCCCGTAGACAGATTTTATAGTTTTTTGATGTAG 954 Query 5313 GGGAGTGCCTCTGTCTTCTAAATAGAGGATGTCTGCCCATTCAGAGACAAAGGCTCTAGT 5372 || | ||||||||||| || | | |||||||| ||||| ||||| ||||||| Sbjct 955 TGGCTTTCCTCTGTCTTCGGCGTATAAAAATTCTGCCCACTCAGACACAAATACTCTAGT 1014 Query 5373 CCACGCGAGGACAAATGAAGCTATGTGTGAGGGGTATCTGTTATTAAATATGAGAGAGGA 5432 ||| || | ||||| ||||| ||||| || | ||| ||||| || ||| | || || Sbjct 1015 CCAGGCCAAAACAAACGAAGCAATGTGGGAAGCGTACCTGTTGTTTTCTATTAAAGGAGA 1074 Query 5433 ttttttttGCAAAGTATGCAGGCACAGGGCTGAGTCATCAGCTTCCAGAAAGGTGATTGG 5492 || |||| ||||| || | ||| | | | || |||| ||| | ||| |||||||| Sbjct 1075 GTTGTTTTCTAAAGTGTGTAAGCATATGTCATCATCTTCAGTTTCTAAAAACGTGATTGG 1134 Query 5493 TTTGTAAGTGTATGTCACGTGA 5514 || || | |||||||||||| Sbjct 1135 CTTATACTTATATGTCACGTGA 1156 >seq1393656 Length=1543 Score = 196 bits (216), Expect = 9e-46 Identities = 409/601 (68%), Gaps = 10/601 (2%) Strand=Plus/Plus Query 8144 GTTGATTCTCTGAATCTCCGGGTGTTGGGTGAATGCTACTGGCCCCGTCACTTTGAACCT 8203 |||||| ||||||||||| | | || ||| | ||||| || |||||| ||||||| Sbjct 1 GTTGATGTTCTGAATCTCCCGCAGGCCGGAAAATACCACTGGGCCGGTCACTCTGAACCT 60 Query 8204 GAAAGAGAGGTCGACAGAGTTAATAGATGCATCGTTAAGCTCCGCCTGTCTAATAATTTC 8263 |||||| | || | ||||| ||| ||| || |||| || | || | | ||| || Sbjct 61 GAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCTTTAAAATCTC 120 Query 8264 TTCCACGTCACCGCTGTGGTCTCGGTAAGCAATGTCTGTCATAAACCGTTCGATCTCTTC 8323 |||||| ||||||| || | ||||| || |||| ||||||| | || |||||||| Sbjct 121 ACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCTCAATCTCTTC 180 Query 8324 CTCGTCCAGTTCTCCGCGACCAGCTCGGTGGACCGTGGCTGCCAAGTCCGTGCTAATGCG 8383 || || | ||||| | || |||| | || ||||| |||||||| |||||||||| Sbjct 181 CTGCTCTAACTCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCAATGCTAATGCG 240 Query 8384 TCGCATGAGCTGGGAAAAGGCATTGGTTCCC--GGTTCATTCCACACTCTGCTGTATATA 8441 ||||| | ||| || | |||||| ||||||||||||||||||||| | | Sbjct 241 AGACATGATGTTACTAAAAGCCT--GTTCCCCATTTTCATTCCACACTCTGCTGTACACA 298 Query 8442 ACAGCGCCATCTTCGTCTCGGGCTCGCATGACCACCTGGCCCAAGTTTAGCTCCACGTGG 8501 | |||||||||| || ||||| ||| || ||||| ||| || ||| ||| | Sbjct 299 ATTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGCCAGATTAAGCATCACATAT 358 Query 8502 CGAGCAAAGACGGG--GCTGAGGCGGAGGTGGTGGTGCAGATAATTGAGAGTGGTGGCTA 8559 | |||| | ||| | | | | | ||||| | | || || || ||||| || | Sbjct 359 CTCCCAAA-AGGGGAAGAT-ACCCTAATTTGGTGATTTAAGTAGTTTAGTGTGGTAGCAA 416 Query 8560 TGTGCTCCACGATGAAGAAGTAGATGACCCATCTGCGGATGGTCGACTCGTTAATGTTGC 8619 |||| || | | || ||| | || ||||| | ||| || | || |||||| | Sbjct 417 TGTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTTCATTAATG-TCA 475 Query 8620 CCTCTCG-CTCCAGCATGTTTATGGCTTCGTAAAAGTCCACAGCGAAGTTAAAAAACTGC 8678 ||| || ||||| | || | || ||||| | ||||| ||||||||||||||| Sbjct 476 CCTAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGTTAAAAAACTGC 535 Query 8679 TCGTTGCGGGCGGAGACTGTCAGCTCTTCTTGCAGGAGACGAATGACTTCGGCTACGGCG 8738 | ||| | || || || || |||||||||| | | |||||| ||| || || ||| Sbjct 536 TGGTTTCTAGCAGACACAGTGAGCTCTTCTTCTAATAAGCGAATGGTTTCTGCCACAGCG 595 Query 8739 G 8739 | Sbjct 596 G 596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 96698852772720