Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq1344 489 4e-134 >seq1344 Length=81602 Score = 489 bits (542), Expect = 4e-134 Identities = 1179/1756 (67%), Gaps = 36/1756 (2%) Strand=Plus/Plus Query 22536 GGTAATCCGGCGGTATTCATGCAGCGGTTCACGATATTACGGTCGATGCCCTCTGCTTCA 22595 || ||| |||||| || || |||||| | | || ||||| || || || ||| Sbjct 517 GGCAATTTGGCGGTGTTGATACAGCGGGTAATAATCTTACGTGAAATATTTTCCGCATCA 576 Query 22596 GCCAGGGCTTTAACGTTACCATCAAATTCTTTCAG---TCGGC--GCAAGTACCGTTTCC 22650 ||||| || || || ||| ||||||| ||| | ||||| ||| || || | | Sbjct 577 GCCAGCGCAGAAATATTTCCAGCAAATTCATTCTGCAATCGGCTTGCA--TAACGCTGAC 634 Query 22651 CGCGTTCGTATGCACTGGTTGGCCGATAGTCGTTACCCAA-CTGTGACAACTGCTGC-AT 22708 | ||||| || ||||| ||||| ||||| ||||||||||| ||| || || ||| || || Sbjct 635 CACGTTCATAAGCACTTGTTGGGCGATAATCGTTACCCAATCTG-GATAA-TGCAGCCAT 692 Query 22709 TTGTTCATCATCCAGCTCTCCAACGAGAACCCGATAATCGCTACCAGTGATGATGGCTGT 22768 || |||||||||||||| ||||| ||||| |||||||| || | || | || | Sbjct 693 CTGCTCATCATCCAGCTCGCCAACCAGAACACGATAATCACTTTCGGTAAGTGCAGCAGC 752 Query 22769 TTTGCGGCGGCGTGAGCCATCGGCAATTTCGATAATGCCTGACGTCCTTCTGGCGAACGC 22828 ||| || ||||| |||||||||||||| || | || || |||| ||||||| Sbjct 753 TTTACGACGGCGACTCCCATCGGCAATTTCTATGACACCAGATACTCTTCGACCGAACGC 812 Query 22829 GGGGTTCTGCTGTCCTGA-AGTGAGGAATGAAGGGATAAGGTCGGCCAGCGCTGATTCGT 22887 || |||| || || | ||| || || |||||||| || || |||| || || Sbjct 813 CGGTGTCTGTTGACCAGTCAGT-AGAAAAGAAGGGATGAGATCATCCAGTGCGTCCTCAG 871 Query 22888 TCAGCAATTCCTGATCACGTTCATTACCGAGCCAAACCATTGTGGCCTTTTCGACTTTAT 22947 | |||| || || |||||||||||||| ||| ||| | || ||| || || ||| Sbjct 872 TAAGCAGCTCTTGGTCACGTTCATTACCTGACCATACCCGAGAGGTCTTCTCAACACTAT 931 Query 22948 CAGCAGGAATGGTTTCCAGCTTAAAAGTCACGTTGCGGCCGCAAACCGGTAGCGTAATGC 23007 || | | | ||| || |||| |||| | || || || || || | |||||| Sbjct 932 CACCCCGGAGCACTTCAAGAGTAAACTTCACATCCCGACCACATACAGGCAAAGTAATGG 991 Query 23008 TATTCCCGGACAACGAACTTAATTTGCTCTGTAAGTCGC-CAACCATCGGCGAAACCGAT 23066 ||| ||| ||| | || ||| || | ||| ||| | || ||| Sbjct 992 CATTACCG-----CGAGCCA---TTACTCC-TACG-CGCGCAATTAACGAATCCACCATC 1041 Query 23067 GGCGCTTTTTGCGGCGCATTATGGTTATTGCTCATGAACGTTTCGATGTTGGGCGCATTT 23126 || || | | | || || | | | ||| | || || | ||| ||| || | Sbjct 1042 GGGGCAGCTGGTGTCG-ATAACGAAGTATCTTCA--ACCGGTTGAGTATTGAGCGTATGT 1098 Query 23127 TTT--AATATAGAGCG-ATTCTTCATAGT-TAGTCCTCCCAACGAGGTTTGATTAGATCT 23182 ||| |||| ||| | |||||| | || || ||||| || ||||| || ||| Sbjct 1099 TTTGGAATAACAGGCGCACGCTTCATTATCTAATC-TCCCAGCGTGGTTTAATCAGACGA 1157 Query 23183 TCGAAAATTTCTTTGCAGACTGGCTCCCAGATTTCCACTGCATTTCGCCAGGCATTAAGC 23242 ||||||||||| |||||||| || ||||| || | ||||||| ||||||| | Sbjct 1158 TCGAAAATTTCATTGCAGACAGGTTCCCAAATAGAAAGAGCATTTCTCCAGGCACCAGTT 1217 Query 23243 GTTGAGCGTTGATTTGCTGCTTGCTCAAATACGGTGCGCATCTTGATCTGGCCTTTACCA 23302 | |||||||||| || || ||||| || || | |||| |||||| ||||||||| Sbjct 1218 GAAGAGCGTTGATCAATGGCCTGTTCAAAAACAGTTCTCATCCGGATCTGACCTTTACCA 1277 Query 23303 ACTTCATCAGTGACCCGCACGACCTGTCGCAAGACCATAGCTCCCCAGGTATTTCGAATC 23362 |||||||| || | ||||| || | | | ||||| |||||||| || ||||| Sbjct 1278 ACTTCATCCGTTTCACGCACAACATTTTTTAGAACCATGCTTCCCCAGGCATCCCGAATT 1337 Query 23363 TGCTCCTCCATCCACCGGGACTGATTGCCGTTAGTAAGGCTGTATTTGGTCAGGAGCAGG 23422 ||||||||||||||| |||||||| ||| ||| || |||||||||||| || | | Sbjct 1338 TGCTCCTCCATCCACGGGGACTGAGAGCCATTACTATTGCTGTATTTGGTAAGCAAAATA 1397 Query 23423 CGGACGACAGGTTCAAAGCCGCCCAAATCGACGGTTTCAAGCAGGTCGAGCAGCATGGTG 23482 || || |||| || || || | ||| ||| | | ||||| || | ||||| | Sbjct 1398 CGAACATCAGGCTCGAACCCTTTAAGATCAACGTTCTTGAGCAGATCACGAAGCATATCG 1457 Query 23483 AAAAACTGAAGAACTGATGCATAGTCGAACAGCTCTGCAGGGGTTGCTACCACGATGACG 23542 |||||||| || | || | ||||| |||| ||| ||||| || | || | | || Sbjct 1458 AAAAACTGCAGTGCGGAGGTGTAGTCAAACAACTCAGCAGGCGTGGGAACAATCAGCACA 1517 Query 23543 TCAGCAGCACAGACAACGTTAATAGTTCCCGTACCCAAGTTTGGCGCGCTGTCTATGACG 23602 ||||||||||| || || ||||| || || |||||| ||| ||||||||||| || || Sbjct 1518 TCAGCAGCACATACGACATTAATCGTGCCGATACCCAGGTTAGGCGCGCTGTCAATAACT 1577 Query 23603 ATAATGTCGTAGTTATCCCATACAGACTCGATAGCAGCACGAAGCATCAGATGAGG-GGG 23661 || | || |||| || |||| || || || || |||||||| || || | Sbjct 1578 ATGACATCATAGTCATGAGCAACAGTTTCAATGGCCAGTCGGAGCATCAGGTGTGGATCG 1637 Query 23662 ATGAGGTAGCTTCCCCTCGGAATGGTACTGCATCAGATCTGTTTCAATGCGGTGAAGGGC 23721 || || || || || || | | ||| | || |||||||| ||||| || || Sbjct 1638 GTG-GGCAGTTTACCTTCATCAAATTTGCCCATTAACTCAGTTTCAATACGGTGCAGAGC 1696 Query 23722 CAGGCAGCTGGGGATTATGTCGAGACCCGGCCAGCATGTTGGTTTTATCGCATATTCAGC 23781 ||| ||| || || ||||| || ||||||||||| || || ||||| ||||| | Sbjct 1697 CAGACAGGAAGGAATAATGTCAAGCCCCGGCCAGCAAGTGGGCTTTATTGCATAAGTGAC 1756 Query 23782 GTTGTCGCGTTTACCC-AGGTAAAATGGAAGCAGTGTATCGTCTGCGTGAATGTGCAAAT 23840 | ||| | ||| ||| || || || || || || || || ||||| ||||| || | || Sbjct 1757 ATCGTC-CTTTTCCCCAAGATAGAAAGGCAGGAGAGTGTCTTCTGCATGAATATGAAGAT 1815 Query 23841 CAGGAACGTAACCGTGGTACATAGATGCAGTCCCTTGCGGGTCGTTCCCTTCAACGAGTA 23900 | ||||| | ||||| ||||| || || || || || |||||||| ||||| ||||| | Sbjct 1816 CTGGAACCCATCCGTGATACATTGAGGCTGTTCCCTGGGGGTCGTTACCTTCCACGAGCA 1875 Query 23901 GGACGCGGTGCCCTTGCAAGGCTAACCATTGCGCCTGGTGTACTGCAGATGAGGTTTTAT 23960 || || |||| | || || || || || | || || | | |||||||| | Sbjct 1876 AAACACGTAGCCCCTTCAGAGCCAAATCCTGAGCAAGATGAACAGAAACAGAGGTTTTGT 1935 Query 23961 AAACCCCTCCCTTGTGTGACATAACGGAAAGTACAACCGGGTTTTTATCGTCAGGTCTTT 24020 |||| ||||| || || | ||| | || || | || |||| | | Sbjct 1936 AAACGCCTCCTTTATGGGCAGCAACCCCGATCACCGGTGGAAATACGTCTTCAGCACGTC 1995 Query 24021 GGTTTGGGTTACCAAACACACTCCGCATATGGCTAATTTGGTCAATTGTGTAGCCAGCGC 24080 | | | | ||||||||| |||||||| ||||||| |||||||| || ||| | | Sbjct 1996 GCAATCGCGTTCCAAACACATCACGCATATGATTAATTTGTTCAATTGTATAACCAACAC 2055 Query 24081 GACGTTCTACTCGGCCCCTCATCTCAAAATCAGGAGCCGGTAGACGACCAGCTTTTTCCG 24140 | | || || || || | || || | ||| || |||||| || || ||||| || | Sbjct 2056 GTTGCTCAACCCGTCCTCGAATTTCCATATCCGGGTGCGGTAGTCGCCCTGCTTTCTCGG 2115 Query 24141 CGTCTCTGATAGCCTGCGGTGTTACGCCGATCAGGTCTGCAACTTCTGTTATACCCCAGC 24200 | |||||||||||||| | | || || | | || || |||| ||| | ||||| Sbjct 2116 CATCTCTGATAGCCTGAGAAGAAACCCCAACTAAATCCGCTGCTTCACCTATTCTCCAGC 2175 Query 24201 GGCGAGTAATACGACGCGCTTCCGGGCTGTCATCGCCGAACTGTGCGATGGCAATAGCGC 24260 | || || || | |||||||||||||||||| |||||||| ||||| ||||| Sbjct 2176 GCCGGGTTATTTTCCTCGCTTCCGGGCTGTCATCATTAAACTGTGCAATGGCGATAGCCT 2235 Query 24261 GCGTCATTTCCTGACC 24276 ||||||||| ||||| Sbjct 2236 TCGTCATTTCATGACC 2251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 130223632321830