Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq8054 104 2e-17 seq203 104 2e-17 seq736207 100 2e-16 seq73042 96.9 2e-15 seq20028 93.3 3e-14 seq67916 82.4 5e-11 >seq8054 Length=53166 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || ||||| ||||| |||||||||||||||| || Sbjct 38341 CCACCACGGAGGCGAAGGACAAGATGCAGTGTAGATTCCTTTTGAATGTTGTAGTTTGCT 38282 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | || ||| | ||| || || ||| |||| | |||||| ||||| || Sbjct 38281 AGAGTCCTCCCATTTTCAAGTTGCTTCCCTGCAAAGATCAATCTTTGCTGATCGGGAGGA 38222 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || |||||||| ||| | | ||| || | ||| |||||| | ||| | Sbjct 38221 ATCCCCTCCTTATCCTGAATCTTTGCCTTCACGTTATCAATAGTGTCTGAGCTCTCAACT 38162 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| | |||||||||| |||||| ||||| |||||||| Sbjct 38161 TCAAGCGTGATTGTCTTGCCGGTCAGTGTTTTGACAAAGATTTGCAT 38115 >seq203 Length=115218 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || || || | ||| || | || ||||| ||||| || ||||||||||||||||| Sbjct 20922 CCACCACGGAGGCGAAGGACAAGATGCAGTGTAGATTCCTTCTGAATGTTGTAGTCGGCT 20863 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | | |||||| | ||| || || ||| |||| | ||| || |||||| || Sbjct 20862 AGAGTCCTGCCATCTTCAAGTTGCTTACCTGCAAAGATCAATCTCTGCTGATCCGGAGGA 20803 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTT 18278 | || |||||||| ||| | ||| || | ||| |||||| | ||| | Sbjct 20802 ATCCCCTCCTTATCCTGAATCTTGGCCTTCACGTTATCAATAGTGTCTGAGCTCTCAACT 20743 Query 18279 TCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||| | |||||||||| ||||| ||||| |||||||| Sbjct 20742 TCAAGTGTGATTGTCTTGCCGGTCAGGGTTTTGACAAAGATTTGCAT 20696 >seq736207 Length=2896 Score = 100 bits (110), Expect = 2e-16 Identities = 143/199 (72%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 18128 TGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCC 18187 ||| ||||| |||||||||||||||| ||| | || | | |||||| |||||| | Sbjct 461 TGTAGATTCCTTTTGAATGTTGTAGTTGGCTAGAGTCCTCCCATCTTCAGGTTGTTTCCT 402 Query 18188 CGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAAT-TTGTTGCT 18246 ||| |||| | ||||||||||||| || | || |||||||| ||| ||| | || Sbjct 401 TGCAAAGATCAATCTTTGTTGATCCGGAGGAATCCCCTCCTTATCCTGAATCTTGGT-CT 343 Query 18247 TGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATG 18306 | || | |||||||||| | ||| ||||| |||| | |||||||||| Sbjct 342 TCACGTTATCAACAGTGTCTGAGCTCTCAACTTCAAGCATGATCATCTTGCCGGTCAGGT 283 Query 18307 TTTTTACAAAAATTTGCAT 18325 |||| ||||| |||||||| Sbjct 282 TTTTGACAAAGATTTGCAT 264 >seq73042 Length=21847 Score = 96.9 bits (106), Expect = 2e-15 Identities = 143/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 || ||||| ||||| ||||||||||||||||| |||| || | | |||||| | ||| Sbjct 16 TGCAGTGTAGATTCCTTTTGAATGTTGTAGTCAGCCAGAGTCCTCCCATCTTCAAGTTGC 75 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || ||| |||| | ||| || |||||| || | || |||||||| ||| | Sbjct 76 TTACCTGCAAAGATCAATCTCTGCTGATCCGGAGGAATCCCCTCCTTATCCTGAATCTTG 135 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 || || | ||| |||||| | ||| ||||| ||||| | |||| |||| Sbjct 136 GCCTACACGTTATCAATAGTGTCTGAGCTCTCAACTTCAAGCGTGATTGTCTTGCGGGTC 195 Query 18303 AATGTTTTTACAAAAATTTGCAT 18325 | ||||| ||||| |||||||| Sbjct 196 AGGGTTTTGACAAAGATTTGCAT 218 >seq20028 Length=39891 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| ||||| ||||||||||| |||| ||| | ||| Sbjct 30741 AGAACCAGGTGGAGGGTAGATTCCTTTTGGATGTTGTAGTCCGCCAGGGTTCGGCCATCC 30800 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || ||| ||||||| || || || || ||| | ||||||||||| Sbjct 30801 TCGAGCTGCTTACCGGCAAAGATAAGCCTCTGCTGGTCTGGGGGAATCCCTTCCTTATCC 30860 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | |||||| | | | |||||| | |||| ||| | ||||| | Sbjct 30861 TGAATCTTGGCCTTGACATTGTCGATGGTGTCAGAGCTCTCGACTTCGAGAGTGATTGTC 30920 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATTTTTAAACTCTTATAAA 18342 ||||| || | ||||| ||||| || ||||| || || || | ||||| Sbjct 30921 TTGCCAGTGAGGGTTTTAACAAAGATCTGCATCTTGAAGCTTTAATAAA 30969 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| || | ||| || |||||||| || |||||||||||||| |||| || | | || Sbjct 30231 AAGCACAAGGTGCAGGGTTGATTCCTTCTGAATGTTGTAGTCAGCCAAGGTCCTGCCGTC 30290 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||| || || || ||| |||| || || || |||||| ||| | ||||||||||| Sbjct 30291 CTCCAGCTGCTTACCAGCAAAGATTAGCCTCTGCTGATCCGGGGGAATTCCTTCCTTATC 30350 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | ||| || | ||| |||||| | ||| ||| | ||||| | Sbjct 30351 CTGGATCTTGGCCTTAACATTATCAATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGT 30410 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || ||||| | ||||| ||||| || ||||| Sbjct 30411 CTTTCCGGTAAGGGTTTTGACAAATATCTGCAT 30443 >seq67916 Length=22924 Score = 82.4 bits (90), Expect = 5e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| || | ||| || || |||||||| ||||||||||| ||||||| || || || Sbjct 18914 AAGCACAAGGTGCAGGGTCGATTCTTTCTGAATGTTGTAATCGGCCAAGGTACGACCGTC 18973 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 |||| ||| ||||| || ||||||| || || || || ||| | ||||||||| || Sbjct 18974 CTCCAGTTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCTGGGGGGATGCCTTCCTTGTC 19033 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | |||||| | ||| |||||| ||| ||| | |||||| | Sbjct 19034 TTGGATCTTGGCCTTGACATTATCAATGGTGTCAGAACTCTCAACTTCCAAGGTGATTGT 19093 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||||| || | ||||| || || || ||||| Sbjct 19094 CTTGCCCGTAAGGGTTTTGACGAAGATCTGCAT 19126 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 331938553322775