Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_003266.2 Length=35994 Score E Sequences producing significant alignments: (Bits) Value seq416950 289 6e-74 seq1393656 127 4e-25 >seq416950 Length=5269 Score = 289 bits (320), Expect = 6e-74 Identities = 516/747 (69%), Gaps = 16/747 (2%) Strand=Plus/Plus Query 5941 CAAAGGCGGGCATGACCTCCGCACTCAGGTTGTCAGTTTCTAGAAACGAGGAGGATTTGA 6000 |||| | ||||| | || ||||| | |||||||||||||| || || || ||||||| Sbjct 1242 CAAATTCTGGCATAATTTCAGCACTAAAGTTGTCAGTTTCTATGAATGATGAAGATTTGA 1301 Query 6001 TATTGACGGTGCCGGCGGAGATGCCTTTCAAGAGCCCCTCG--TCCATCTGGTCAGAAAA 6058 | | | | || || |||| ||| || | || | || | ||||| ||||| Sbjct 1302 TGGAAAAGTTACCTCTGGCGATGGTTTTT--GACGCGCTGGCTTCTAGTTGGTCTGAAAA 1359 Query 6059 GACAATCTTTTTGTTGTCGAGTTTGGTGGCGAAGGAGCCGTAGAGGGCGTTGGAGAGGAG 6118 ||||| ||||||||||| | ||| ||||| ||| ||| || | ||||||||| || || Sbjct 1360 CACAATTTTTTTGTTGTCCAATTTAGTGGCAAAGCTGCCATATAAGGCGTTGGAAAGTAG 1419 Query 6119 CTTGGCGATGGAGCGCATGGTCTGGTTCTTTTCCTTGTCGGCGCGCTCCTTGGCGGCGAT 6178 ||| || ||| |||||||| ||||||||||| ||||| || || ||||| |||| Sbjct 1420 CTTAGCTATGCTTCGCATGGTTTGGTTCTTTTCTTTGTCTGCTTTTTCTTTGGCTCCGAT 1479 Query 6179 GTTGAGCTGCACGTACTCGCGCGCCACGCACTTCCATTCGGGGAAGACGGTGGTTAGCTC 6238 ||| ||||||||||| || |||||||||||||| || ||||||| ||| ||| || Sbjct 1480 GTTTAGCTGCACGTATTCTTTGGCCACGCACTTCCACTCTGGGAAGATGGTTGTTCTTTC 1539 Query 6239 GTCTGGCACGATTCTGACCTGCCAGCCCCGGTTATGCAGGGTGATGAGGTCAACGCTGGT 6298 |||||| | || | || ||| || | ||| |||| || || | ||| | || Sbjct 1540 GTCTGGAAGAATGCGCACTGCCCATCCTCTGTTGTGCAAAGTAATCAAGTCTATAGAAGT 1599 Query 6299 GGCCACCTCGCCGCGCAGGGGCTCGTTGGTCCAGCAGAGGCGGCCGCCCTTGCGCGAGCA 6358 || || || || |||| |||||||| |||||||| || | ||||| || | ||||| Sbjct 1600 AGCTACTTCTCCTCGCAAAGGCTCGTTAGTCCAGCACAGCCTTCCGCCTTTTCTGGAGCA 1659 Query 6359 GAAggggggcagggggTCCAGCATAAGCTCGTCgggggggTCAGCATCGATGGTGAAGAT 6418 || || ||||| || || | | |||||| || || || || ||||||||||| || Sbjct 1660 AAACGGAGGCAGTTCATCAAGAAACAACTCGTCTGGAGGATCCGCGTCGATGGTGAAAAT 1719 Query 6419 GCCTGGCAGGAGGTCGGGGTCGAAGTAGCTTATGCAGGTGCCCAGATCGTCCAGAGAAGC 6478 |||||| || || ||| || ||| | | ||| | | | | |||| Sbjct 1720 GCCTGGAAGAAGACACTCGTCAAAATAG-TCAATTTTTTGCTCTAAGTTTTC----AAGC 1774 Query 6479 TT-----GCCATTCGCGCACGGCCAGCGCGCGCTCGTAGGGACTAAGGGGCGTGCCC-CA 6532 || |||||| | | || | || | || || ||| | | ||| ||||| | Sbjct 1775 TTTCTGATCCATTCTGTCGCAGCTAAGGCTCTTTCATACGGATTTAAAGGC-TGCCCGCT 1833 Query 6533 GGGCATGGGGTGGGTGAGCGCGGAGGCGTACATGCCGCAGATGTCGTAGACGTAGAGGGG 6592 ||| | || || || || || ||| ||||||||||||||||| || || || | || Sbjct 1834 GGGAAAAGGATGCGTTAGAGCACTGGCATACATGCCGCAGATGTCATACACATAAATTGG 1893 Query 6593 CTCATCAAGGATGCCAATGTAGGTGGGGTAGCAGCGGCCCCCGCGGATGCTGGCGCGCAC 6652 || || | ||||||||| || ||||| |||||||| || || |||||||| ||| || Sbjct 1894 CTGTTCCATGATGCCAATATAAGTGGGATAGCAGCGACCACCACGGATGCTCTGGCGGAC 1953 Query 6653 GTAGTCATACAACTCGTGCGAGGGGGC 6679 ||||||||||| || || || || || Sbjct 1954 GTAGTCATACATTTCATGAGATGGTGC 1980 Score = 131 bits (144), Expect = 3e-26 Identities = 369/561 (66%), Gaps = 8/561 (1%) Strand=Plus/Plus Query 8546 CGGTTGACGTCCTGGATCTGACGCCTCTGGGTGAAGGCCACGGGACCCGTGAGTTTGAAC 8605 ||||||| || ||| |||| ||| || || |||| || || || | | ||||| Sbjct 3691 CGGTTGATGTTCTGAATCTCCCGCAGGCCGGAAAATACCACTGGGCCGGTCACTCTGAAC 3750 Query 8606 CTGAAAGACAGTTCGACAGAATCAATCTCGGTATCATTGACGGCGGCCTGCCGCAGAATC 8665 |||||||| | ||| | ||| ||||| || | ||||| || || | ||| | |||| Sbjct 3751 CTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCATTAACTGCCACTTGCTTTAAAATC 3810 Query 8666 TCTTGCACGTCGCCCGAGTTGTCCTGGTAGGCAATCTCGGTCATGAACTGCTCGATCTCC 8725 || |||||| || ||| || || || || || || | ||| |||||||| ||||| Sbjct 3811 TCACTCACGTCTCCGCTGTTATCGTGATAAGCTATTTCTGCCATAAACTGCTCAATCTCT 3870 Query 8726 TCCTCCTGAAGGTCTCCGCGGCCGGCGCGCTCCACGGTGGCCGCGAGGTCGTTGGAGATG 8785 |||| || | ||||| | || || | ||| || ||||| || | ||| || ||| Sbjct 3871 TCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCAACTGTGGCAGCCAAGTCAATGCTAATG 3930 Query 8786 CGGCCCATGA-GCTGCGAGAAGGC-GTTCATGCCCGCCTCGTTCCAGACGCGGCTGTAAA 8843 || ||||| | | | | ||| | |||| || || ||||| || | |||||| | Sbjct 3931 CGAGACATGATGTTACTAAAAGCCTGTTC--CCCATTTTCATTCCACACTCTGCTGTACA 3988 Query 8844 CCACGGCGCCCTCGGGATCGCGGGCGCGCATGACCACCTGGGCGAGGTTGAGCTCCACGT 8903 | | || || | | ||| | ||| || ||||| || || || ||| ||| | Sbjct 3989 CAATTTGTCCATCTTCGTTTCTGGCTCTCATTACTACCTGCGCCAGATTAAGCATCACAT 4048 Query 8904 GGCGCGCAAAAACCGCGTAGTT--GCAGAGGCGCTGGTAGAGGTAGTTGAGCGTGGTGGC 8961 | | ||||| | | || | | | | || | | |||||| || ||||| || Sbjct 4049 ATCTCCCAAAA--GGGGAAGATACCCTAATTTGGTGATTTAAGTAGTTTAGTGTGGTAGC 4106 Query 8962 AATGTGCTCAGTGACAAAGAAGTACATAATCCAGCGGCGGAGCGGCATTTCGCTGACGTC 9021 |||||| || | ||||| ||| |||| | |||||| |||| | |||| | | ||| Sbjct 4107 AATGTGTTCTGCCACAAAAAAGAACATCACCCAGCGTTGGAGAGTTGTTTCATTAATGTC 4166 Query 9022 GCCCAGGGCTTCCAAGCGCTCCATGGCCTCGTAAAAGTCCACGGCGAAGTTGAAAAACTG 9081 || || || ||||| |||| || |||| ||||| | || || ||||| |||||||| Sbjct 4167 ACCTAGCGCCTCCAAACGCTGAATAACCTCATAAAAATTTACAGCAAAGTTAAAAAACTG 4226 Query 9082 GGAGTTGCGTGCAGATACGGT 9102 ||| | ||||| || || Sbjct 4227 CTGGTTTCTAGCAGACACAGT 4247 Score = 100 bits (110), Expect = 6e-17 Identities = 226/340 (66%), Gaps = 0/340 (0%) Strand=Plus/Plus Query 5493 TTGGGATCAAAAACCAGTTTTCCGCCGTTCTTTTTGATGCGTTTCTTACCTCTGGTCTCC 5552 || ||||||||||| || || || || || || || ||||| | |||||||| |||| Sbjct 818 TTTGGATCAAAAACTAGCTTCCCTCCATTTTTCTTAATGCGGTGTTTACCTCTTTGCTCC 877 Query 5553 ATGAGCTCGTGTCCCCGCTGGGTGACAAAGAGGCTGTCCGTGTCCCCGTAAACCGACTTT 5612 |||||| ||| ||| | ||| ||||| | |||||| ||||||||||| || || ||| Sbjct 878 ATGAGCCGGTGCCCCTCTTCGGTCACAAACAAGCTGTCAGTGTCCCCGTAGACAGATTTT 937 Query 5613 ATGGGTCGGTCCTCGAGTGGGACGCCGCGGTCCTCGTCGTAGAGGAAACCCGACCACTCT 5672 || | | | | ||||| || | ||| ||| |||| | || | | |||||| Sbjct 938 ATAGTTTTTTGATGTAGTGGCTTTCCTCTGTCTTCGGCGTATAAAAATTCTGCCCACTCA 997 Query 5673 GAGACGAAGGCCCGGGTCCAAGCCAGCACGAAGGAGGCCACGTGGGAGGGATAGCGGTCG 5732 || || || | | ||||| |||| || || || || | |||||| | || | || | Sbjct 998 GACACAAATACTCTAGTCCAGGCCAAAACAAACGAAGCAATGTGGGAAGCGTACCTGTTG 1057 Query 5733 TTATCCACCAGCGGGTCCACCTTCTCCAGTGTATGCAAACACATGTCCCCCTCGTCCACA 5792 || || | | || || || | || || || || ||||| | || || Sbjct 1058 TTTTCTATTAAAGGAGAGTTGTTTTCTAAAGTGTGTAAGCATATGTCATCATCTTCAGTT 1117 Query 5793 TCCAGGAAGGTGATTGGCTTGTAAGTGTAGGCCACGTGAC 5832 || | || ||||||||||| || | || | |||||||| Sbjct 1118 TCTAAAAACGTGATTGGCTTATACTTATATGTCACGTGAC 1157 >seq1393656 Length=1543 Score = 127 bits (140), Expect = 4e-25 Identities = 346/524 (66%), Gaps = 8/524 (2%) Strand=Plus/Plus Query 8583 CCACGGGACCCGTGAGTTTGAACCTGAAAGACAGTTCGACAGAATCAATCTCGGTATCAT 8642 |||| || || || | | ||||||||||||| | ||| | ||| ||||| || | |||| Sbjct 36 CCACTGGGCCGGTCACTCTGAACCTGAAAGATATTTCCATAGAGTCAATGTCTGCGTCAT 95 Query 8643 TGACGGCGGCCTGCCGCAGAATCTCTTGCACGTCGCCCGAGTTGTCCTGGTAGGCAATCT 8702 | || || | ||| | |||||| |||||| || ||| || || || || || | Sbjct 96 TAACTGCCACTTGCTTTAAAATCTCACTCACGTCTCCGCTGTTATCGTGATAAGCTATTT 155 Query 8703 CGGTCATGAACTGCTCGATCTCCTCCTCCTGAAGGTCTCCGCGGCCGGCGCGCTCCACGG 8762 | | ||| |||||||| ||||| |||| || | ||||| | || || | ||| || | Sbjct 156 CTGCCATAAACTGCTCAATCTCTTCCTGCTCTAACTCTCCTCTCCCTGCTCTCTCAACTG 215 Query 8763 TGGCCGCGAGGTCGTTGGAGATGCGGCCCATGA-GCTGCGAGAAGGC-GTTCATGCCCGC 8820 |||| || | ||| || ||||| ||||| | | | | ||| | |||| || Sbjct 216 TGGCAGCCAAGTCAATGCTAATGCGAGACATGATGTTACTAAAAGCCTGTTC--CCCATT 273 Query 8821 CTCGTTCCAGACGCGGCTGTAAACCACGGCGCCCTCGGGATCGCGGGCGCGCATGACCAC 8880 || ||||| || | |||||| || | || || | | ||| | ||| || || Sbjct 274 TTCATTCCACACTCTGCTGTACACAATTTGTCCATCTTCGTTTCTGGCTCTCATTACTAC 333 Query 8881 CTGGGCGAGGTTGAGCTCCACGTGGCGCGCAAAAACCGCGTAGTT--GCAGAGGCGCTGG 8938 ||| || || || ||| ||| | | | ||||| | | || | | | | || Sbjct 334 CTGCGCCAGATTAAGCATCACATATCTCCCAAAA--GGGGAAGATACCCTAATTTGGTGA 391 Query 8939 TAGAGGTAGTTGAGCGTGGTGGCAATGTGCTCAGTGACAAAGAAGTACATAATCCAGCGG 8998 | | |||||| || ||||| |||||||| || | ||||| ||| |||| | |||||| Sbjct 392 TTTAAGTAGTTTAGTGTGGTAGCAATGTGTTCTGCCACAAAAAAGAACATCACCCAGCGT 451 Query 8999 CGGAGCGGCATTTCGCTGACGTCGCCCAGGGCTTCCAAGCGCTCCATGGCCTCGTAAAAG 9058 |||| | |||| | | ||| || || || ||||| |||| || |||| ||||| Sbjct 452 TGGAGAGTTGTTTCATTAATGTCACCTAGCGCCTCCAAACGCTGAATAACCTCATAAAAA 511 Query 9059 TCCACGGCGAAGTTGAAAAACTGGGAGTTGCGTGCAGATACGGT 9102 | || || ||||| |||||||| ||| | ||||| || || Sbjct 512 TTTACAGCAAAGTTAAAAAACTGCTGGTTTCTAGCAGACACAGT 555 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 101049289418040