Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_003324.1 Length=57416 Score E Sequences producing significant alignments: (Bits) Value seq4712 156 1e-33 seq181 98.7 3e-16 >seq4712 Length=61641 Score = 156 bits (172), Expect = 1e-33 Identities = 178/234 (76%), Gaps = 4/234 (2%) Strand=Plus/Plus Query 44069 CATGCCGAGCGC-TGCGAGGTAGGTGTCGAGGATGGCCTCTTGCTCCATCCGCTCGTCGG 44127 ||| || ||||| ||| | || || || ||||| | || || ||| |||||||||| Sbjct 5313 CATCCCCAGCGCCTGC-ATATACGTCTCCAGGATCGTTTCCTGTTCCTGACGCTCGTCGG 5371 Query 44128 TGTCCTGCTTGCGCA-GCGAGATCACCTTCCGCAGGATCTTGGCATCGAAGCCGGTCCCC 44186 ||||||||||||| ||| ||| | | ||||| |||| | ||||| ||| | ||| Sbjct 5372 CATCCTGCTTGCGCATGCG-GATGATGGTGCGCAGCGCCTTGACGTCGAAACCGTTGCCC 5430 Query 44187 TTTGCCTCGCCGTACACATCCTTGATGTCGTCGGCGATGGTCTTCTTTTCTTCCTCCAAG 44246 || |||||||| || || ||||||||||||||| |||||||||||| |||||||| | Sbjct 5431 TTGGCCTCGCCATAGACGTCCTTGATGTCGTCGCTGATGGTCTTCTTCTCTTCCTCGAGA 5490 Query 44247 CGTTCGATGCGGTGGATGAAGGCCTTGAGCTGATCGCGCGCAACGCTGTGCACG 44300 || |||||||| | ||||| |||||||||||| | ||| | ||||||| || Sbjct 5491 CGCTCGATGCGCTCGATGATGGCCTTGAGCTGCCCCTTCGCGAAGCTGTGCGCG 5544 >seq181 Length=116846 Score = 98.7 bits (108), Expect = 3e-16 Identities = 106/138 (77%), Gaps = 2/138 (1%) Strand=Plus/Minus Query 48669 GTCGGCGCCCGCATCCGGCTCCGCCGCAACATCATCGGCATGAGCCAGGAGACGCT-GGC 48727 || ||| |||| | || | ||||| | ||| | |||||||||||||| | ||| ||| Sbjct 65788 GTTGGCAGCCGCGTGCGCATGCGCCGGATCATGCTTGGCATGAGCCAGGAAAAGCTCGGC 65729 Query 48728 TGCGCATCTCGGCATCACCTTCCAGCAGGTCCAGAAATACGAAAAGGGCGCCAACCGCGT 48787 || |||||| | || || |||||||| ||||||||||| |||||| |||||||| | Sbjct 65728 GAAGCG-CTCGGCCTGACATTTCAGCAGGTGCAGAAATACGAGAAGGGCACCAACCGCAT 65670 Query 48788 CGGCGCCAGCAGGCTGCA 48805 ||| || ||| ||||||| Sbjct 65669 CGGTGCGAGCCGGCTGCA 65652 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 161252812555020