Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq8054 102 7e-17 seq519039 96.9 3e-15 seq360634 96.9 3e-15 seq1015561 91.5 1e-13 seq463317 91.5 1e-13 seq59979 91.5 1e-13 seq497574 89.7 5e-13 seq340010 89.7 5e-13 seq203 89.7 5e-13 seq111374 87.8 2e-12 seq67916 87.8 2e-12 >seq8054 Length=53166 Score = 102 bits (112), Expect = 7e-17 Identities = 147/205 (72%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATC-GCTCATTGTGCTCGAGTCTTCGAGTT 143039 ||| | ||||||||| ||||| |||||||| | ||| | || ||| | ||| |||| Sbjct 38318 ATGCAGTGTAGATTCCTTTTGAATGTTGTAGTTTGCT-AGAGTCCTCCCATTTTCAAGTT 38260 Query 143040 GTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTT 143099 | || || ||| |||||| | ||||||||||||||| || || || || || ||| | Sbjct 38259 GCTTCCCTGCAAAGATCAATCTTTGCTGATCGGGAGGAATCCCCTCCTTATCCTGAATCT 38200 Query 143100 TTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGG 143159 || || | | || | ||||| | | || ||||||| || | |||||||||| Sbjct 38199 TTGCCTTCACGTTATCAATAGTGTCTGAGCTCTCAACTTCAAGCGTGATTGTCTTGCCGG 38140 Query 143160 TCAATGTTTTTACGAATATTTGCAT 143184 ||| |||||| || || |||||||| Sbjct 38139 TCAGTGTTTTGACAAAGATTTGCAT 38115 >seq519039 Length=4174 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| ||||| | || | || | || ||||| ||||| || ||||||||| Sbjct 3899 GCCACCTCTCAAACGGAGGACAAGGTGCAGGGTGGATTCCTTTTGGATATTGTAATCGGC 3840 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | |||||||| ||||| |||||| |||||||||||||||| || || || Sbjct 3839 AAGGGTTCGGCCATCTTCGAGCTGTTTTCCAGCAAAGATCAGACGTTGCTGGTCAGGGGG 3780 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || ||| |||| | || | ||||| | | || || Sbjct 3779 GATGCCTTCCTTGTCCTGGATCTTTGCCTTTACATTATCAATGGTGTCAGAGCTCTCGAC 3720 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||| || | || || || || || ||||| Sbjct 3719 CTCGAGAGTGATCGTCTTGCCAGTGAGGGTCTTCACAAAGATCTGCAT 3672 >seq360634 Length=6173 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| ||||| | || | ||| | || ||||| || || || ||||| || Sbjct 5826 GCCACCTCTCAAACGGAGGACAAGATGCAGGGTCGATTCCTTCTGAATATTGTAGTCAGC 5767 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | |||||||| || || || ||| ||||||||||||||||||| || || Sbjct 5766 AAGGGTTCGGCCATCTTCGAGCTGCTTTCCCGCAAAGATCAGACGTTGCTGATCAGGGGG 5707 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||||||||||||| || || || | | || | ||||||| | || || Sbjct 5706 TATGCCTTCTTTGTCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGCTCTCAAC 5647 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||| | ||| | |||||| || || | ||||| ||||| || ||||| Sbjct 5646 TTCCAAAGTAATCGTCTTACCAGTGAGGGTTTTAACGAAGATCTGCAT 5599 >seq1015561 Length=2156 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| ||||| | || | || | || ||||| ||||| || ||||||||| Sbjct 1962 GCCACCTCTCAAACGAAGGACAAGGTGCAGGGTGGATTCCTTTTGGATATTGTAATCGGC 1903 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | |||||||| || || |||||| ||||||||||||||||||| || || Sbjct 1902 AAGGGTTCGGCCATCTTCGAGCTGCTTTCCAGCAAAGATCAGACGTTGCTGATCAGGGGG 1843 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || || |||| | || | ||||| | | || || Sbjct 1842 GATGCCTTCCTTGTCCTGGATCTTCGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGAC 1783 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| || | ||||| || || || ||||| Sbjct 1782 CTCGAGAGTGATTGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCAT 1735 >seq463317 Length=4689 Score = 91.5 bits (100), Expect = 1e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| || || || ||| ||||||||||||||||||| || ||||||||||| ||| Sbjct 4515 TCTTCGAGCTGCTTTCCCGCAAAGATCAGACGTTGCTGATCAGGGGGTATGCCTTCCTTG 4456 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || || | | || | ||||||| | || ||||| | ||| | | Sbjct 4455 TCTTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAGCTCTCAACTTCTAAAGTAATC 4396 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 ||||| || || | ||||| ||||| || ||||| Sbjct 4395 GTCTTACCAGTGAGGGTTTTAACGAAGATCTGCAT 4361 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| ||||| | || | || | || ||||| ||||| || ||||||||| Sbjct 4360 GCCACCTCTCAAACGAAGGACAAGGTGCAGGGTGGATTCCTTTTGGATATTGTAATCGGC 4301 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | ||||||||| || || |||||| ||||||||||||||||||| || || Sbjct 4300 AAGGGTTCGGCCGTCTTCGAGCTGCTTTCCAGCAAAGATCAGACGTTGCTGATCAGGTGG 4241 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| || || || || |||| | || | ||||| | | || || Sbjct 4240 GATGCCTTCCTTATCTTGGATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCTCTCGAC 4181 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | |||||||| || | || || || || || ||||| Sbjct 4180 CTCGAGAGTGATTGTCTTGCCAGTGAGCGTCTTAACAAAGATCTGCAT 4133 >seq59979 Length=24830 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| ||||| | || | || | || ||||| ||||| || ||||||||| Sbjct 8634 GCCACCTCTCAAACGGAGGACAAGGTGCAGGGTGGATTCCTTTTGGATATTGTAATCGGC 8693 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || | ||||||||||| || |||||| |||||||||||||||| || || || Sbjct 8694 AAGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCAAAGATCAGACGTTGCTGGTCAGGGGG 8753 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 |||||||| ||||| || ||| |||| | || | || || | | || || Sbjct 8754 GATGCCTTCCTTGTCCTGGATCTTTGCCTTTACATTGTCAATGGTATCAGAGCTCTCGAC 8813 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||||| | || || || || || ||||| Sbjct 8814 CTCGAGAGTGATTGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 8861 >seq497574 Length=4355 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||||| || | |||| || || || || ||||||||||||||| Sbjct 2114 CCTCCTCTCAGACGCAGTACAAGGTGAAGAGTTGACTCCTTCTGTATGTTGTAATCGGCA 2055 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || | | ||| || || || || |||||| |||| | | ||||| ||||| || Sbjct 2054 AGAGTTCGCCCGTCCTCAAGCTGCTTTCCAGCAAAGATTAACCTCTGCTGGTCGGGTGGA 1995 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| || | | || | |||||| | | || ||| Sbjct 1994 ATCCCCTCCTTGTCTTGAATTTTGGCCTTCACATTGTCGATCGTGTCAGAGCTCTCAACT 1935 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||||||| ||||| || || || ||||| Sbjct 1934 TCCAGAGTAATGGTCTTGCCGGTCAGGGTTTTGACAAAGATCTGCAT 1888 >seq340010 Length=6563 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||||| | ||| | || | |||| || ||||| || || |||||||||||| Sbjct 4236 CCTCCTCTCAGACGGAGGACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAATCGGCA 4177 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | |||| ||| |||||||| || |||||| |||||| | ||||| ||||| || Sbjct 4176 AGGGTGCGTCCGTCCTCGAGTTGCTTTCCAGCAAAGATCAACCTCTGCTGGTCGGGTGGA 4117 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || || || ||||| |||||| || | | || | ||||| | | || ||| Sbjct 4116 ATCCCCTCCTTGTCTTGAATTTTGGCCTTCACATTGTCAATGGTGTCAGAGCTCTCAACT 4057 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | ||| | ||||||||||||| || || || || || ||||| Sbjct 4056 TCCAGAGTAATTGTCTTGCCGGTCAGGGTCTTGACAAAGATCTGCAT 4010 >seq203 Length=115218 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 142981 ATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTG 143040 ||| | ||||||||| || || |||||||| ||| | || || ||||| ||||| Sbjct 20899 ATGCAGTGTAGATTCCTTCTGAATGTTGTAGTCGGCTAGAGTCCTGCCATCTTCAAGTTG 20840 Query 143041 TTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTT 143100 ||||| ||| |||||| | |||||||| ||||| || || || || || ||| || Sbjct 20839 CTTACCTGCAAAGATCAATCTCTGCTGATCCGGAGGAATCCCCTCCTTATCCTGAATCTT 20780 Query 143101 TTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGT 143160 || | | || | ||||| | | || ||||||| || | ||||||||||| Sbjct 20779 GGCCTTCACGTTATCAATAGTGTCTGAGCTCTCAACTTCAAGTGTGATTGTCTTGCCGGT 20720 Query 143161 CAATGTTTTTACGAATATTTGCAT 143184 || ||||| || || |||||||| Sbjct 20719 CAGGGTTTTGACAAAGATTTGCAT 20696 >seq111374 Length=16363 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||| || || || |||||||| | || || |||||||||||||| ||| Sbjct 7928 GTAGATTCCTTCTGAATATTGTAATCTGCAAGAGTCCTTCCATCTTCGAGTTGTTTCCCA 7987 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||||| | |||||||| ||||| || || || || || ||| || || Sbjct 7988 GCAAAGATCAATCTCTGCTGATCTGGAGGAATCCCCTCCTTATCCTGAATCTTGGACTTC 8047 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | || |||| | || ||||||| ||| | ||||| |||||||| || Sbjct 8048 ACATTGTCAATTGTATCCGAGCTCTCAACTTCAAGAGTGATAGTCTTACCGGTCAAGGTC 8107 Query 143168 TTTACGAATATTTGCATA 143185 || || || || |||||| Sbjct 8108 TTCACAAAGATCTGCATA 8125 >seq67916 Length=22924 Score = 87.8 bits (96), Expect = 2e-12 Identities = 113/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 143030 TCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 143089 |||||||| || || || ||| |||||||||||||||| || || |||||||| |||||| Sbjct 19916 TCTTCGAGCTGCTTTCCCGCAAAGATCAGACGTTGCTGGTCAGGGGGTATGCCCTCTTTG 19975 Query 143090 TCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACC 143149 || || || || | | || | ||||||| | || ||||| | ||| | | Sbjct 19976 TCCTGGATCTTAGCCTTCACGTTGTCAATGGTGTCCGAGCTCTCAACTTCCAAAGTAATC 20035 Query 143150 GTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||| || || | ||||| ||||| || |||||| Sbjct 20036 GTCTTACCAGTGAGGGTTTTAACGAAGATCTGCATA 20071 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 142982 TGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGT 143041 |||| || ||||| ||||| || ||||||||| | || | ||||||||| || Sbjct 20096 TGAAGGGTGGATTCCTTTTGGATATTGTAATCGGCAAGGGTTCGGCCGTCTTCGAGCTGC 20155 Query 143042 TTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTT 143101 || |||||| |||||||||||||||| || || || || ||||| ||||| ||| || Sbjct 20156 TTTCCAGCAAAGATCAGACGTTGCTGGTCAGGGGGGATACCTTCCTTGTCCTGAATCTTA 20215 Query 143102 TGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTC 143161 |||| | || | ||||| | || || || | ||| | |||||||| || Sbjct 20216 GTCTTTACATTGTCAATGGTGTCAGAACTCTCGACCTCGAGAGTGATTGTCTTGCCAGTG 20275 Query 143162 AATGTTTTTACGAATATTTGCAT 143184 | || || || || || ||||| Sbjct 20276 AGGGTCTTGACAAAGATCTGCAT 20298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 442029762272400