Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq497574 100 2e-16 seq73042 84.2 2e-11 seq1049907 82.4 6e-11 seq119950 82.4 6e-11 seq62192 82.4 6e-11 >seq497574 Length=4355 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 18814 TCCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGC 18873 ||| || |||| | || || | ||| | ||||||||||| |||||||||||||| || Sbjct 2571 TCCACCACGCAGACGCAAGACGAGGTGAAGTGTAGACTCCTTCTGAATATTGTAATCGGC 2512 Query 18874 CATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGG 18933 | ||| | ||||||||||| ||||| ||| | || || ||||||||||| || Sbjct 2511 GAGAGTTCGCCCATCCTCCAGCTGCTTACCAGCAAATATCAGCCTCTGCTGATCAGGAGG 2452 Query 18934 CACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGT 18993 | || || ||||| ||| ||| |||||| | | | ||||||| ||| Sbjct 2451 AATCCCTTCCTTGTCCTGAATCTTCGCTTTTACATTATCAATAGTATCGGAGCTCTCAAC 2392 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| | || || ||||| || || || ||||| ||||| || ||||| Sbjct 2391 TTCCAGAGTGATCGTTTTGCCCGTCAACGTTTTCACAAATATCTGCAT 2344 >seq73042 Length=21847 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||||||| | ||||| ||||| ||||| || ||||| || | ||| | | ||||| Sbjct 466 ACCATGTGAAGAGTAGATTCCTTCTGAATGTTATAATCTGCGAGGGTTCGGCCATCCTCA 525 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTC 18948 |||||||| || ||| |||| || ||||||||||| ||| | ||||| ||||| Sbjct 526 AGCTGTTTGCCAGCAAAAATGAGCCTCTGCTGATCAGGGGGAATTCCCTCCTTGTC 581 >seq1049907 Length=2088 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||||| |||| ||||||||||| ||||| || ||||| |||| || | || || Sbjct 255 CACCAGATGCAGAGTAGACTCCTTCTGAATGTTATAATCAGCCAGAGTACGTCCATCTTC 196 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 || ||| ||||| ||| |||| || |||||||| || || | |||||| || || Sbjct 195 CAACTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTG 136 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||||| || || | | | || || | |||| || | |||||| ||||| Sbjct 135 GATTTTAGCCTTCACGTTATCAATGGTGTCCGAACTCTCCACCTCCAAGGTAATAGTTTT 76 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || |||||||| ||||| || ||||| Sbjct 75 CCCCGTCAAAGTTTTCACAAAGATCTGCAT 46 >seq119950 Length=15500 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/212 (69%), Gaps = 6/212 (3%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||||| ||||||||||| || || || ||||| |||| || | || ||| Sbjct 12864 ACCAGGTGCAGAGTAGACTCCTTCTGGATGTTATAATCAGCCAGAGTACGTCCATCTTCC 12805 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 ||||| ||||| ||| |||| || |||||||| || ||| | ||||| || || | Sbjct 12804 AGCTGCTTACCAGCAAAAATCAGCCTCTGCTGGTCGGGGGGAATACCCTCCTTATCCTGA 12745 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAG-GCTCCGT--TTCGACGGTAATGGTT 19009 || ||| ||| || | | | || | ||| |||| | || | |||||| ||| Sbjct 12744 ATCTTCGCTTTCACGTTATCAATGGT---GTCAGAGCTCTCTACCTCCAAGGTAATAGTT 12688 Query 19010 TTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || || || ||||| ||||| || ||||| Sbjct 12687 TTCCCAGTCAAGGTTTTCACAAAGATCTGCAT 12656 >seq62192 Length=24286 Score = 82.4 bits (90), Expect = 6e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 18845 GTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGTTTACCC 18904 || || ||||| || ||||||||||| || | || ||||||| |||||||| || Sbjct 19906 GTGGATTCCTTCTGGATATTGTAATCGGCAAGAGTGCGTCCGTCCTCGAGCTGTTTTCCT 19965 Query 18905 GCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTCTGTTTT 18964 ||| | || | |||||||| || ||| | ||||| ||||| |||||| || Sbjct 19966 GCAAAGATCAACCTCTGCTGGTCGGGGGGAATTCCCTCCTTGTCTTGAATTTTGGCCTTC 20025 Query 18965 ACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTTAAAGTT 19024 || | | | | ||||||| | ||| ||||| || ||||| || || |||| ||| Sbjct 20026 ACATTGTCAATAGTATCGGAATTCTCAACTTCGAGAGTGATGGTCTTGCCAGTTAGGGTT 20085 Query 19025 TTGACAAAAATTTGCATT 19042 || || || || |||||| Sbjct 20086 TTAACGAAGATCTGCATT 20103 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362764919120830