Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_004813.1 Length=57930 Score E Sequences producing significant alignments: (Bits) Value seq1966556 434 3e-117 seq8709189 372 1e-98 seq6916087 141 3e-29 >seq1966556 Length=1002 Score = 434 bits (480), Expect = 3e-117 Identities = 260/272 (96%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 4369 TTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGACTCCAATTTGAGCAAGGCTATG 4428 |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 550 TTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGATTCCAATTTGAGCAAGGCTATG 609 Query 4429 TGCCATCTCAATGCTCGTTCTTAACTCAACAGGAGATGCTTTGTGCATACAGCCCCTCGT 4488 ||||||||| || ||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 610 TGCCATCTCGATACTCGTTCTTAACTCAACAGAAGATGCTTTGTGCATACAGCCCCTCGT 669 Query 4489 TTATTATTTATCTCCTCAGCCAGCCGCTGGGCTTTCAGTGGATTTTGGATAACAGAAAGG 4548 ||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| Sbjct 670 TTATTATTTATCTCCTCAGCCAGCCGCTGTGCTTTCAGTGGATTTCGGATAACAGAAAGG 729 Query 4549 CCGGGAAATACCCAGCCTCGCTTTGTAACGGAGT--AGACGAAAGTGATCGTGCCTACGC 4606 |||||||||||||||||||||||||||||||||| ||||||||||||| | |||||| | Sbjct 730 CCGGGAAATACCCAGCCTCGCTTTGTAACGGAGTAGAGACGAAAGTGATTGCGCCTACCC 789 Query 4607 GGATATTATCGTGAGGATGCTTCATCGCCATT 4638 |||||||||||||||||||| ||||||||||| Sbjct 790 GGATATTATCGTGAGGATGCGTCATCGCCATT 821 Score = 113 bits (124), Expect = 1e-20 Identities = 84/97 (87%), Gaps = 1/97 (1%) Strand=Plus/Minus Query 55747 GTTTGATGACAAAAAATTAGCGCAAGAGGACAAAAAATCACCTTGCGCTAATACTCTGTC 55806 ||||||||||||||||||||||||||| |||||||| ||||||||||||||| |||||| Sbjct 498 GTTTGATGACAAAAAATTAGCGCAAGAAGACAAAAA-TCACCTTGCGCTAATGCTCTGTT 440 Query 55807 TCAGGTCACTAATCAACTCTAACTCATTGATTAATAG 55843 |||||||||||| ||||| | |||||| |||| Sbjct 439 ACAGGTCACTAATACCATCTAAGTAGTTGATTCATAG 403 Score = 80.6 bits (88), Expect = 9e-11 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 50961 CACTATTAATCAATGAGTTAGAGGTGATTAGTGACCTGAGACAGAGCATTAGCGCAAGGT 51020 |||||| |||||| | ||||| | |||||||||||| |||||||||||||||||||| Sbjct 401 CACTATGAATCAACTACTTAGATGGTATTAGTGACCTGTAACAGAGCATTAGCGCAAGGT 460 Query 51021 GATTTTT 51027 ||||||| Sbjct 461 GATTTTT 467 >seq8709189 Length=223 Score = 372 bits (412), Expect = 1e-98 Identities = 206/206 (100%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 52879 CTGGCGTCAGTTGTTACGGGAAGGTATCAGAGTGGCCAGATGCACTGTGGCACGTCTCAT 52938 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 223 CTGGCGTCAGTTGTTACGGGAAGGTATCAGAGTGGCCAGATGCACTGTGGCACGTCTCAT 164 Query 52939 GGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGACCATCAGCCG 52998 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 163 GGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGACCATCAGCCG 104 Query 52999 GAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCA 53058 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 103 GAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCA 44 Query 53059 GCTGTGGGTGGCTGATTTTACTTACG 53084 |||||||||||||||||||||||||| Sbjct 43 GCTGTGGGTGGCTGATTTTACTTACG 18 Score = 327 bits (362), Expect = 4e-85 Identities = 193/201 (96%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 50039 CTGGCGTCAGTTGTTACGGGAAGGTATCAGAGTGGCCAGATGCACTGTGGCACGTCTCAT 50098 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 223 CTGGCGTCAGTTGTTACGGGAAGGTATCAGAGTGGCCAGATGCACTGTGGCACGTCTCAT 164 Query 50099 GGCAGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGCACTACCGTCAGCCG 50158 ||| ||||||||||||||||||||||||||||||||||||||||| || ||| ||||||| Sbjct 163 GGCGGTTATGGGACTTGCCGGTGTTCTCCGGGGTAAAAAGGTCCGTACGACCATCAGCCG 104 Query 50159 GAAAGCCGTTGCCGCATGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGTCCAGACCA 50218 |||||||||||||||| |||||||||||||||||||||||||||||||||| || ||||| Sbjct 103 GAAAGCCGTTGCCGCAGGCGACCGCGTAAACCGTCAGTTCGTGGCAGAACGACCTGACCA 44 Query 50219 GTTGTGGGTGGCTGATTTTAC 50239 | ||||||||||||||||||| Sbjct 43 GCTGTGGGTGGCTGATTTTAC 23 >seq6916087 Length=260 Score = 141 bits (156), Expect = 3e-29 Identities = 88/92 (96%), Gaps = 2/92 (2%) Strand=Plus/Minus Query 53076 TTACT-TACGTCAGCACATGGCAGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTT 53134 ||||| ||| |||||||||||| ||||||||||||||||||||||||||||||||||||| Sbjct 91 TTACTCTAC-TCAGCACATGGCGGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTT 33 Query 53135 GCCGGATACATTGTGGGGTGGCGGGTCTCATC 53166 ||||||||||| |||||||||||||||||||| Sbjct 32 GCCGGATACATCGTGGGGTGGCGGGTCTCATC 1 Score = 122 bits (134), Expect = 3e-23 Identities = 75/80 (94%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 50247 AGCACATGGCAGGGCTTCGTTTATGTGGCGTTCATCATTGATGTGTTCGCCGGATACATC 50306 |||||||||| ||||||||| |||||||||||||||||||||||||| |||||||||||| Sbjct 80 AGCACATGGCGGGGCTTCGTCTATGTGGCGTTCATCATTGATGTGTTTGCCGGATACATC 21 Query 50307 GTGGGATGGCAGGTCTCATC 50326 ||||| |||| ||||||||| Sbjct 20 GTGGGGTGGCGGGTCTCATC 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 162697337384280