Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_004914.3 Length=62706 Score E Sequences producing significant alignments: (Bits) Value seq1966556 430 5e-116 seq8709189 354 3e-93 seq6916087 141 3e-29 >seq1966556 Length=1002 Score = 430 bits (476), Expect = 5e-116 Identities = 259/272 (95%), Gaps = 2/272 (1%) Strand=Plus/Plus Query 37457 TTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGACTCCAATTTGAGCGAGGCTATG 37516 |||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| Sbjct 550 TTCTTCGTCTGTTTCTACTGGTATTGGCACAAACCTGATTCCAATTTGAGCAAGGCTATG 609 Query 37517 TGCCATCTCGATACTCGTTCTTAACTCAACGGGAGATGCTTTGTGCATACAGCTCCCCGT 37576 |||||||||||||||||||||||||||||| | |||||||||||||||||||| || ||| Sbjct 610 TGCCATCTCGATACTCGTTCTTAACTCAACAGAAGATGCTTTGTGCATACAGCCCCTCGT 669 Query 37577 TTATTATTTATCTCCTCAGCCAGCCGCTGTGCTTTCAGGGGATTTCTGATAACAGAAAGG 37636 |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 670 TTATTATTTATCTCCTCAGCCAGCCGCTGTGCTTTCAGTGGATTTCGGATAACAGAAAGG 729 Query 37637 CCGGGAAATACCCAGCCTCGCTTTGTAACGGAGT--AGACGAAAGTGATCGCACCTACCC 37694 |||||||||||||||||||||||||||||||||| ||||||||||||| || ||||||| Sbjct 730 CCGGGAAATACCCAGCCTCGCTTTGTAACGGAGTAGAGACGAAAGTGATTGCGCCTACCC 789 Query 37695 GGATATTATCGTGAGGATGCTTCATCGCCATT 37726 |||||||||||||||||||| ||||||||||| Sbjct 790 GGATATTATCGTGAGGATGCGTCATCGCCATT 821 >seq8709189 Length=223 Score = 354 bits (392), Expect = 3e-93 Identities = 202/206 (98%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 56752 CGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTA 56811 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 18 CGTAAGTAAAATCAGCCACCCACAGCTGGTCAGGTCGTTCTGCCACGAACTGACGGTTTA 77 Query 56812 CGCGGTCGCCTGCGGCAACGGCTTTCCGGCTGATGGTCGTACGGACCTTTTTACCCCGGA 56871 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 78 CGCGGTCGCCTGCGGCAACGGCTTTCCGGCTGATGGTCGTACGGACCTTTTTACCCCGGA 137 Query 56872 GAACACCGGCAAGTCCCATAACCGCCATGAGACGTGCCACTGTACATCTGGCCACCCTGA 56931 |||||||||||||||||||||||||||||||||||||||| || ||||||||||| |||| Sbjct 138 GAACACCGGCAAGTCCCATAACCGCCATGAGACGTGCCACAGTGCATCTGGCCACTCTGA 197 Query 56932 TTCCTTCCCGTAACAACTGACGCCAG 56957 | |||||||||||||||||||||||| Sbjct 198 TACCTTCCCGTAACAACTGACGCCAG 223 >seq6916087 Length=260 Score = 141 bits (156), Expect = 3e-29 Identities = 88/92 (96%), Gaps = 2/92 (2%) Strand=Plus/Plus Query 56670 GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATAAACGCCACATAG 56729 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| Sbjct 1 GATGAGACCCGCCACCCCACGATGTATCCGGCAAACACATCAATGATGAACGCCACATAG 60 Query 56730 ACGAAGCCCTGCCATGTGCTGACGTA-AGTAA 56760 ||||||||| |||||||||||| ||| ||||| Sbjct 61 ACGAAGCCCCGCCATGTGCTGA-GTAGAGTAA 91 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 176119614786120