Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq111374 104 1e-17 seq497574 89.7 3e-13 >seq111374 Length=16363 Score = 104 bits (114), Expect = 1e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 43895 CCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTT 43954 || |||||||| | | |||| || || || || || || ||||||||||| | Sbjct 8354 CCACCTCTCAAACGCAGATCCAAGTGAAGAGTTGATTCCTTCTGGATATTATAATCAGCT 8413 Query 43955 AATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGT 44014 || ||| |||| |||| ||| || || ||| | |||| | |||||||||| ||||| Sbjct 8414 AAGGTACGGCCATCCTCCAGTTGCTTGCCAGCATAGATCACCTGTTGCTGGTCAAGAGGT 8473 Query 44015 ACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACA 44074 |||| || || ||| ||| ||| ||||| || ||| ||| || | || || Sbjct 8474 GCACCATCCTTGTCTTGAATCTTTGCCTTGACATTATCAATAGTTTCCGTACTGTCAACC 8533 Query 44075 TCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| ||||| |||||||| ||||| |||||||| Sbjct 8534 TCAAGAGTGATGGTTTTTCCGGTCAAAGTCTTAACAAAGATTTGCAT 8580 >seq497574 Length=4355 Score = 89.7 bits (98), Expect = 3e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| || | ||| ||||||||||| ||||||| ||||| ||| |||| | || || | Sbjct 2272 CATCTTCAAGTTGCTTTCCTGCAAAGATCAACCTCTGCTGATCCGGAGGAATCCCCTCCT 2213 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | || ||| ||| || || || ||| |||||| | ||| || |||| ||||| Sbjct 2212 TGTCCTGAATCTTTGCCTTCACATTATCAATAGTATCAGAGCTCTCAACTTCGAGCGTAA 2153 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || ||||| | || |||||||| |||||||| Sbjct 2152 TGGTCTTGCCGGTCAGGGTTTTCACAAAGATTTGCAT 2116 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 310442140366860