Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq497574 87.8 1e-12 seq109075 86.0 5e-12 seq203 82.4 6e-11 >seq497574 Length=4355 Score = 87.8 bits (96), Expect = 1e-12 Identities = 161/235 (69%), Gaps = 1/235 (0%) Strand=Plus/Minus Query 48494 TCAAAA-CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTA 48552 |||||| || || |||| | || || | |||||||| |||||| ||||| ||||| Sbjct 2577 TCAAAATCCACCACGCAGACGCAAGACGAGGTGAAGTGTAGACTCCTTCTGAATATTGTA 2518 Query 48553 ATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATC 48612 ||| || | |||| | ||||||||||||||||| | | || | | ||||||||| Sbjct 2517 ATCGGCGAGAGTTCGCCCATCCTCCAGCTGCTTACCAGCAAATATCAGCCTCTGCTGATC 2458 Query 48613 CACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGA 48672 || | | |||||||||| ||| ||| || | | | || ||||||| Sbjct 2457 AGGAGGAATCCCTTCCTTGTCCTGAATCTTCGCTTTTACATTATCAATAGTATCGGAGCT 2398 Query 48673 CTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| || | || || ||||| || || | ||||||||||| ||||||||| Sbjct 2397 CTCAACTTCCAGAGTGATCGTTTTGCCCGTCAACGTTTTCACAAATATCTGCATC 2343 >seq109075 Length=16623 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 |||||||| || |||||||| || | ||| | || || |||||||| ||| | | Sbjct 10610 TCCTTTTGGATATTGTAATCGGCAAGGGTTCGGCCATCTTCAAGCTGCTTTCCGGCAAAG 10551 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || ||||||||||||||| || | | ||||||||| || || ||| | | Sbjct 10550 ATCAAACGCTGCTGATCCGGGGGGATGCCCTCCTTGTCCTGGATCTTGGCCTTTACATTG 10491 Query 48656 GCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACA 48715 | ||||| || | ||| ||||| || || || ||||| |||||||| || ||| Sbjct 10490 TCAATGGTGTCAGAGCTCTCAACCTCGAGAGTGATCGTCTTACCAGTGAGAGTCTTGACA 10431 Query 48716 AAAATCTGCATCGTG 48730 |||||||||||| || Sbjct 10430 AAAATCTGCATCTTG 10416 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 48536 TCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAA 48595 ||||||||||| ||||||||||| | | |||| |||| || |||||||| || | | Sbjct 11066 TCCTTTTGAATATTGTAATCAGCAAGTGTTCGCCCGTCTTCAAGCTGCTTTCCAGCAAAG 11007 Query 48596 ATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGAC 48655 || | ||||||||| || || | | |||||||||| || || ||||| | Sbjct 11006 ATCAGACGCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGGATCTTGGCCTTGACATTG 10947 Query 48656 GCTATGGTATCGGTAGACTCCGTC-TCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | ||||| || | || | | | || | ||||| || || || ||||| ||||| || Sbjct 10946 TCAATGGTGTCTG-AGCTTTCAACTTCCAAAGTTATTGTCTTGCCAGTGAGGGTTTTGAC 10888 Query 48715 AAAAATCTGCAT 48726 ||| |||||||| Sbjct 10887 AAAGATCTGCAT 10876 >seq203 Length=115218 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| |||||||| ||||| |||| |||| | |||||||||||| Sbjct 21126 TGGAGGGTGGACTCCTTCTGAATGTTATAATCGGCCAGGGTTCGCCCATCCTCCAGCTGC 21067 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| | |||| | | ||||||||| || | || ||||||||| ||| || Sbjct 21066 TTGCCGGCAAAAATGAGCCTCTGCTGATCAGGAGGAATACCTTCCTTGTCTTGAATCTTT 21007 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | || ||||| ||| |||| | ||| ||||| || || || Sbjct 21006 GCCTTCACGTTATCAATAGTATCAAAGCTCTCAATCTCCAGTGTGATGGTCTTGCCTGTC 20947 Query 48704 AGAGTTTTCACAAAAATCTGCAT 48726 | || |||||||| |||||||| Sbjct 20946 AACGTCTTCACAAATATCTGCAT 20924 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 368608740123695