Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Picea_20abies_20[ConGenIE_20PRJEB1822-1.0_202015-05-12] 10,253,695 sequences; 12,301,475,675 total letters Query= NC_008520.2 Length=132239 Score E Sequences producing significant alignments: (Bits) Value seq497574 113 3e-20 seq134495 104 2e-17 seq203 98.7 7e-16 seq544196 84.2 2e-11 seq3042684 82.4 6e-11 seq340010 82.4 6e-11 >seq497574 Length=4355 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| |||||| |||| |||||||| || || ||||| || | | Sbjct 2344 ATGCAGATATTTGTGAAAACGTTGACGGGCAAAACGATCACTCTGGAAGTTGAGAGCTCC 2403 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | |||||| || ||| ||||| ||||| |||| ||||| Sbjct 2404 GATACTATTGATAATGTAAAAGCGAAGATTCAGGACAAGGAAGGGATTCCTCCTGATCAG 2463 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| || | ||| || || || |||| ||| |||| | |||||||| ||| Sbjct 2464 CAGAGGCTGATATTTGCTGGTAAGCAGCTGGAGGATGGGCGAACTCTCGCCGATTACAAT 2523 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || |||||||| || | || ||||||||||| ||||| Sbjct 2524 ATTCAGAAGGAGTCTACACTTCACCTCGTCTTGCGTCTGCGTGGTGG 2570 >seq134495 Length=14222 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || ||| |||| ||||| ||||| || |||| || | Sbjct 3925 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACACTGGAGGTTGAGAGCTCT 3866 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || || || ||| ||||| ||||| |||| |||||| Sbjct 3865 GATACTATTGATAACGTCAAGGCGAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAA 3806 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| |||| ||||||||| || |||| ||| ||| | ||||||||||| Sbjct 3805 CAGAGGCTCATTTTTGCGGGCAAGCAGCTGGAGGATGGCCGAACCCTCGCCGATTATAAC 3746 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || |||||||| || || | || ||||||||||| ||||| Sbjct 3745 ATTCAGAAGGAATCTACCCTTCACCTTGTCTTGCGTCTGCGTGGTGG 3699 >seq203 Length=115218 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111187 ATGCAAATTTTTGTCAAAACGATGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111246 ||||| || ||||| || ||| |||| ||||| ||||| || |||| | || | Sbjct 20924 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACACTGGAGATTGAGAGCTTT 20983 Query 111247 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111306 ||| || ||| | || || ||| ||| ||||| ||||| |||| ||||| Sbjct 20984 GATACTATTGATAACGTGAAGGCAAAGATTCAAGACAAGGAAGGTATTCCTCCTGATCAG 21043 Query 111307 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111366 || ||||| |||| ||| ||||| || |||| ||| ||| ||||||||||||| Sbjct 21044 CAGAGGCTCATTTTTGCCGGCAAGCAGCTGGAGGATGGGCGAACCCTGGCCGATTATAAC 21103 Query 111367 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 || || || || || || || || | || |||||||| |||||||| Sbjct 21104 ATTCAGAAGGAGTCCACCCTCCACCTTGTCTTGCGTCTACGCGGTGG 21150 >seq544196 Length=3977 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||| ||||| |||| |||||||| ||||| |||| || |||||| ||| |||| Sbjct 1275 GACAAGGAAGGTATTCCTCCTGATCAACAGAGGCTCATTTTTGTGGGCAAGCAACTGGAG 1216 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| ||| | |||||||||||||| || || |||||||| || || | || ||| Sbjct 1215 GATGGCCGAACCCTAGCCGATTATAATATTCAGAAGGAATCTACCCTTCACCTTGTCTTG 1156 Query 111400 CGTCTGCGCGGTGG 111413 | |||| ||||| Sbjct 1155 TGCCTGCATGGTGG 1142 >seq3042684 Length=525 Score = 82.4 bits (90), Expect = 6e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Plus Query 111301 GATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGAT 111360 ||||| || ||||| |||| ||| ||||| || |||||||| ||| | |||||| Sbjct 13 GATCAGCAGAGGCTCATTTTTGCTGGCAAGCAGCTGGAAGATGGCCGAACCCTCGCCGAT 72 Query 111361 TATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111413 |||||||| || || ||||| || || || | || ||||||||||| ||||| Sbjct 73 TATAATATTCAGAAGGAATCGACCCTCCACCTTGTCTTGCGTCTGCGTGGTGG 125 >seq340010 Length=6563 Score = 82.4 bits (90), Expect = 6e-11 Identities = 99/135 (73%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 111280 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111339 ||||| ||||| |||| ||||| || ||||| || | ||| ||||| || |||| Sbjct 4579 GACAAGGAAGGGATTCCTCCTGATCAGCAGAGGCTCATATTTGCTGGCAAGCAGCTGGAG 4638 Query 111340 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111399 ||| |||| | |||||||| || || || || || |||||||| || | || ||| Sbjct 4639 GATGGGCGAACTCTCGCCGATTACAACATCCAGAAGGAGTCTACACTTCACCTCGTCTTG 4698 Query 111400 CGTCTGCGCGGTGGC 111414 |||||||| |||||| Sbjct 4699 CGTCTGCGTGGTGGC 4713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 370173999319000